Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1207 ATGGCGTGTCTGCCCCCCCTCACGCCCACTCCAACAACGAAGCCCCAAACCCTTACACCGAAACACTTCTCACTCGACCACTTCTCCTCTCTCTGCAAAGACGGCCGAACCCGCGAAGCCGCGGAGTCCCTCATCGAACTGCGCGCCCAAAACCACCACGTGGGCCCCGACATCTACGGCGCCCTCCTCCAGGGCTGCGTCTACGAGCGCGCCCTCCCTCTCGGCCTCCAGCTCCACGCCGACGTCATCAAAAGGGGCCCCACCTTCGCCCGGAACGACTTCCTCCACTCCAAGCTCGTCATCCTCTACGCCAAATGCAACGCCTCCGACGCCGCCACGCGCCTCTTCCTCCGCGAATCACGCAACGTCTTCTCCTGGGCCGCCATCATCGCCCTCCACACCCGAACATCCCGCTGCGAGGACGCGCTTAACGGTTACGTCCAAATGCAGCGCGATGGGTTACTCCCCGACAACTTCGTTCTCCCCAACGTCCTCAAGGCCTGCGGGGCTCTCAGACGGGTCGGGTTCGGTAGAGCGGTTCACGCGTTCGCGGTTAAGACGCTGGGATTGAGGAAACGTTGTGTTTATGTAGATACTAGTCTGGTTGATATGTATGGTAAGTGTGGAGCCTTGGAGGATGCGGAGAGGGTGTTCGACGGAATGTCGGAGAGAAACGACGTCGCTTGGAACTCCATGCTTGTGACTTTCGCGCAGAACGGGATGAATAAGGAGGCGATCGGGGTGTTTCGGGAGATGAGGTTGGAGAATGTGGAGGTGACTTCGGTTGCTTTGTCGGGGTTTTTCACGGCGTGTGCAAATTCGGAGGCGGTTGGAGAAGGGAGACAGGGGCATGGGCTTGCTGTTGTGGGGGGGTTGGAGTTGCATAGTGTTTTGGGGAGTTCGATTATGAACTTCTACTTTAAGGTTGGGATGGTTGAGGAGGCGGAGGAGGTTTTTCAAAACATGGTGTTGAGGGATGTGGTGACGTGGAACTTGGTTGTGGCGGGGTATGTGCAGTTTGGGATGGTTGAGAAGGCGCTTGAGATGTGTGGTGTGATGAGGGAAGAGGGCTTGAGGTTTGACTGTGTGACATTGTCTTCTTTGTTGGCTGCTGCTGCTGATACGAGGGATTTGGAATTGGGTGTGATGGCGCATGCATACTGCATTAAGAATGACTTCGAAGGGGATGTGGTTGTTTCGAGTGGGATAGTTGATATGTACGCAAAGTGTGGGAGGATGGATTGTGCAAGGAGAGTTTTCAGCTGTGTGAGGAAGAAGGATATTGTGCTGTGGAATACAATGTTGGCTGCTTGTGCCGAGTGGGGTCTGAGTGGGGAGGCCTTGAAGTTGTTCTTCCAGATGCAGCTGGAGAGTGTGCCTCCAAATGTGGTTTCATGGAACTCGGTCATTTTTGGTTTCTTGAAGAGTGGTCAGGTTGCTGAGGCTAGAAGCATGTTTGCAGAAATGTGCTCCTCTGGTGTTATGCCTAATTTGATCACGCGGACGATGCTGATGTCTGGTTTGGCTCAGAATGGTTTTGGTTCTGATGCTATGGTGGTTTTCAGGGAAATGCAGGATGTGGGAATTAGACCTAATAGCACAAGCATAACGGCTGCACTCTCAGGTTGCACAGGTATGGCATTATTGAAATACGGAAGGGCGATTCATGGGTATGTTACTAGACATGATATGTCTCAATCTATTCATATCACAACTTCTATAATGGATATGTATGCTAAATGTGGAAGCTTGGATGATGCAAAGTGTGTTTTCGGTCTGTGCTCGACAAAGGAATTGCCTGTGTACAATGCAATGATATCTGCATATGCAACACATGGTCAAGCTAGAGAAGCCCTTGCACTTTTTAAACAAATGGTTAAAGAAGGAATAGTGGCAGATCACATAACCCTTACTAGTGTGTTGTCAGCATGCAGCCATGGGGGATTGGTGAAGGAAGGCATAGAGGTTTTCAATTATATGGCCACTGAACTCCAAATGAAACGGAGCGAGGAACATTATGGTTGTTTGGTGAAACTTCTTGCCAACGATGGCTGGTTGGATGAAGCTCTTGGGACTATTTCAACAATGCCGAGCCATCCAGATGCACATATATTAGGATCTCTGCTTGCAGCTTGTGGACAAAATAATGATGTTGAACTTGCAGATTATATAGCAAAATGGTTGTTGAAATTGGACCCAGATAATTCAGGGAATTATGTGGCTCTTTCGAATGTATATGCAGCTGTAGGAAAATGGGATAAAGTGTCAAATATAAGGGGCTTAATGAAAGAAAAGGGTTTAATTAAGACTCCTGGGTGTAGCTGGATTGAAGTTGGACAAGAACTTCATGTATTTATTGCTAGCGATAGATCACACCCCAAAACAGAGGAGATTTATGTGACATTGGATTTGAATCATCTTGAGCAACTCAGTTACATGAACAGAAACGTGGCTTCCATTCCTCACGTGTCTCTAGTCATGGTTGCTGAACAAATTCTTTGTTCTGGTGCTGAGTTGTTCTGGCTCTACAAGAAGGTGTCACAAGCTAAGAAAAGGCAAAATGCATATGGGTCTAACAAGGAAAACTACCTACCCCAACATGAGAATGCTGTTTTATGGAACTTGAAGGCTCACATTGTTGTGTGTCTTTCTGTTCTTATCTATTGA 2667 0.4893 MACLPPLTPTPTTKPQTLTPKHFSLDHFSSLCKDGRTREAAESLIELRAQNHHVGPDIYGALLQGCVYERALPLGLQLHADVIKRGPTFARNDFLHSKLVILYAKCNASDAATRLFLRESRNVFSWAAIIALHTRTSRCEDALNGYVQMQRDGLLPDNFVLPNVLKACGALRRVGFGRAVHAFAVKTLGLRKRCVYVDTSLVDMYGKCGALEDAERVFDGMSERNDVAWNSMLVTFAQNGMNKEAIGVFREMRLENVEVTSVALSGFFTACANSEAVGEGRQGHGLAVVGGLELHSVLGSSIMNFYFKVGMVEEAEEVFQNMVLRDVVTWNLVVAGYVQFGMVEKALEMCGVMREEGLRFDCVTLSSLLAAAADTRDLELGVMAHAYCIKNDFEGDVVVSSGIVDMYAKCGRMDCARRVFSCVRKKDIVLWNTMLAACAEWGLSGEALKLFFQMQLESVPPNVVSWNSVIFGFLKSGQVAEARSMFAEMCSSGVMPNLITRTMLMSGLAQNGFGSDAMVVFREMQDVGIRPNSTSITAALSGCTGMALLKYGRAIHGYVTRHDMSQSIHITTSIMDMYAKCGSLDDAKCVFGLCSTKELPVYNAMISAYATHGQAREALALFKQMVKEGIVADHITLTSVLSACSHGGLVKEGIEVFNYMATELQMKRSEEHYGCLVKLLANDGWLDEALGTISTMPSHPDAHILGSLLAACGQNNDVELADYIAKWLLKLDPDNSGNYVALSNVYAAVGKWDKVSNIRGLMKEKGLIKTPGCSWIEVGQELHVFIASDRSHPKTEEIYVTLDLNHLEQLSYMNRNVASIPHVSLVMVAEQILCSGAELFWLYKKVSQAKKRQNAYGSNKENYLPQHENAVLWNLKAHIVVCLSVLIY 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1207 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Aed10g1207 888 Pfam PPR repeat 403 427 IPR002885 -
Aed10g1207 888 Pfam PPR repeat 199 225 IPR002885 -
Aed10g1207 888 Pfam PPR repeat 227 256 IPR002885 -
Aed10g1207 888 Pfam PPR repeat 429 456 IPR002885 -
Aed10g1207 888 Pfam E motif 716 777 IPR046848 -
Aed10g1207 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Aed10g1207 888 TIGRFAM PPR: pentatricopeptide repeat domain 328 361 IPR002885 -
Aed10g1207 888 TIGRFAM PPR: pentatricopeptide repeat domain 301 327 IPR002885 -
Aed10g1207 888 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Aed10g1207 888 TIGRFAM PPR: pentatricopeptide repeat domain 429 463 IPR002885 -
Aed10g1207 888 TIGRFAM PPR: pentatricopeptide repeat domain 464 497 IPR002885 -
Aed10g1207 888 TIGRFAM PPR: pentatricopeptide repeat domain 501 532 IPR002885 -
Aed10g1207 888 TIGRFAM PPR: pentatricopeptide repeat domain 601 633 IPR002885 -
Aed10g1207 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Aed10g1207 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Aed10g1207 888 PANTHER OS07G0578800 PROTEIN-RELATED 345 512 IPR045215 GO:0003723|GO:0009451
Aed10g1207 888 Gene3D Tetratricopeptide repeat domain 286 383 IPR011990 GO:0005515
Aed10g1207 888 Gene3D Tetratricopeptide repeat domain 458 549 IPR011990 GO:0005515
Aed10g1207 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Aed10g1207 888 PANTHER OS07G0578800 PROTEIN-RELATED 26 323 IPR045215 GO:0003723|GO:0009451
Aed10g1207 888 PANTHER OS07G0578800 PROTEIN-RELATED 324 373 IPR045215 GO:0003723|GO:0009451
Aed10g1207 888 PANTHER OS07G0578800 PROTEIN-RELATED 508 798 IPR045215 GO:0003723|GO:0009451
Aed10g1207 888 Pfam PPR repeat family 601 645 IPR002885 -
Aed10g1207 888 Pfam PPR repeat family 461 509 IPR002885 -
Aed10g1207 888 Pfam PPR repeat family 325 371 IPR002885 -
Aed10g1207 888 Gene3D Tetratricopeptide repeat domain 185 284 IPR011990 GO:0005515
Aed10g1207 888 Gene3D Tetratricopeptide repeat domain 550 797 IPR011990 GO:0005515
Aed10g1207 888 Gene3D Tetratricopeptide repeat domain 27 184 IPR011990 GO:0005515
Aed10g1207 888 Gene3D Tetratricopeptide repeat domain 384 457 IPR011990 GO:0005515
Aed10g1207 888 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 323 - -
Aed10g1207 888 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 324 373 - -
Aed10g1207 888 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 508 798 - -
Aed10g1207 888 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 345 512 - -
Aed10g1207 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Aed10g1207 888 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1207 Aed-Chr10 11682661 11686031 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1207 129 827 Glycoside Hydrolase AT3G49170 30.522 3.93e-106 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1207 - - gmx:100806010 1327