Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1163 ATGAAGGTCCGGTCGATGAAGCTGAAGGAGGCCCACGCCGCCGCGAAGGGTGGCAGCCGCAGCGCGTCCTTCTGCTCCGTCCTGTGGGACCACCAGAAAGCGAAGCACTTAGTCACCGCCTCCTCCTCCGACGTCTCCATCTGCATCCACGACCCCTTCTTCCCCTCCCTCGCCCCGAAAACCCTCCGCCACCACCGCGACGGCGTCACCGCCTTGGCCCTCAGCCCCAATTCCACTTGCCTCGCCTCCGGATCCGTCGATCACTCCGTCAAACTCTACAAGTTCCCCGGTGGAGAGTTTGAGAGAAATATTACAAGGTTTACACTTCCAATACGGTCCCTGGCGTTTAACAAATCAGGGAGCATGCTAGCTGCGGCTGGTGATGATGAGGGTATCAAGCTTATAAACACATTTGATGGTACCATTGCGAGGGTTCTCAAAGGACACAAAGGGTCAATCACTGGCTTGGCTTTTGACCCGAATGGTGAATACTTAGCCTCCCTGGATTCAACTGGAACTGTTATTCTGTGGGAGCTTCAGTCTGGGAAACCCATTCATAACCTCAAAGGCATAGCTCCTGACACTGGGTTGGATGTTTCGACTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCCGGGTTGAAAAATGATGTGGTGATGTATGATAGGGACACTGCTGAGAAGGTTTTTTCCTTGAGAGGTGATCACATACAGCCAATATGTTTCTTGTGTTGGTCACCCAATGGCAAGTACATTGCTACCTCTGGTTTAGACAGGCAGGTTCTGATTTGGGATGTTGATAGGAAGCAGGACATTGACAGACAGAAGTTTGATGAGAGAGTGTGTTGCATGGCGTGGAAGCCAACTGGGAATGCATTGGCTGTTATTGATGTTATGGGGAAGTATGGTATTTGGGATAATGTTATTCCTTCATCTATGAAGTCTCCAACCGAGGATATACCTGTGAAAAACAAAAGCAATGGGGTTCTTTATGTTGATGAGGAGGATCCTGAAAACAGTGCAAGTGGAAACTCAAGTGATGATGGTGGAAATAGTAATGAGTCTGAGCCGCCTAGCAGGAAAAGATCACGTAAACAGTCTTTGAGTGAGGAAAATTTAGGTGAGGATGGAGGTGAGGAAATTGCATCGTATCCGAAGGTTGATGATACTCACAAGAAACGAAATCGATCAAGCAAGGAGAATTTGGATAGTGGGAATAGCACCATGGTAGTATCCAAGGCAAAGATGCAGGAGGCATTTCAACCAGGATCTACTCCTGTGCAGCCTGGGAAAAGGCATTTCTTATGCTACAATATGCTTGGATGTATAACCTCTATTGAACATGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCCACGAGTTCCTTCAATGACTGATCATTTTGGATTTACAATGGCAGCAATGAATGAGAGTGGAAGTGTATTTGCGAATCCTTGTAAGGGGGAGAAGAACATGAGCACCCTCATGTATCGACCATTTAGTAGCTGGGCCAATAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCAATTGGTGCTGCTTGGGTTGCAGCAGTAACGAGTTTTAACTATCTTCGCATCTTTTCTGAAGGTGGTTTGCAGAGAGATGTGCTTTCACTAGATGGGCCAGTGGTGACAGCATCCGGTTTCAAGGATAAGCTTGCAGTTGTCACTCATGCTTCTGATGGCCTTTCCTCAAATGATCAGATGCTAGAGTTTATGCTATTTAATATTCATCGTGGGACCCAACTTCTTCAAGGTCGCTTGCCACTATCTCCTGGCTCATCCCTAAGTTGGTTGGGGTTTAGTGAAGAAGGCCAATTGTGTTCATATGATTCGAAGGGTGTGCTAAGATCTTATACAAGCAAATTTGGGGGGAGATGGACTCCACTCTTCAGTGCTACTAAAGAGAAGTCAGATGAAAACTATTGGGTGACGGGGTTGAATGCAAGCAAGTTATTTTGCGTTGTATGCAAAATGCCTGAAGAGTTCCCTCAGGCGATGCCTAAGCCAGTTCTCACTCCGTTGAGTCTTTCATTTCCTCTTGCTTCCTCTGACTTGGGATCTGAAGCCCATGAAAACGAGTTTATGATGAACAACTTGCATCTCTATGAGATTCAGAGAAGAATGGACGAAATGGCTTATGTTGGTTTGGACACTACTTCACTTGATGATGATGCTTTCAATTTGGAAGCAGCACAAGATAAATGCATACTGAGGCTTATAGCATCCTGCTGCAACAGTGATAAGCTTGTGCGAGCTACTGAACTTGTGAAGCTTTTGACTCTGGAAAAATCAATGAGAGGTGCAATAAAACTTGTTACTGCTCTGAAGCTTCCAAACCTGGCCGAAAGGTTACTTGAAGAAGCCAAAAAAACTATGGAAACCAACATCAAAGAAAACAGTGTTGCGCCCATTTCACCTGATGCTCTTCCTAGCAGAAGCAACAAGGCACCCCCAACTCGCACTGAAACATTAAATGCAGTTACCATGTCATCATCTCCAAAGTTATCTGCTCCATCATTCATGAGGAAAGAAAAAACACAAGAGGGAGCTAAAGCTGGCACAAGTAAAACTGCAATGGTAAATGAAACTCTGAAGGTAAAGCAAAAAGGTGATGAAGCAAGTAATACTGCAATGTTAAATGATCCCTCTACGAAGTCTTCAAATAAGAGTGGACTTAACAAGTCAGAAACTAGTTTGGGACAATCAAATCGTCCTTCTAATCCACTTTTGAAGTCAGAGACTGGTATGGGACAATCATCAAATCGTCCGTCCAATCCATTTTTGAAGGCTACTATAAAGTGA 2877 0.4519 MKVRSMKLKEAHAAAKGGSRSASFCSVLWDHQKAKHLVTASSSDVSICIHDPFFPSLAPKTLRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFERNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTFDGTIARVLKGHKGSITGLAFDPNGEYLASLDSTGTVILWELQSGKPIHNLKGIAPDTGLDVSTMNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKVFSLRGDHIQPICFLCWSPNGKYIATSGLDRQVLIWDVDRKQDIDRQKFDERVCCMAWKPTGNALAVIDVMGKYGIWDNVIPSSMKSPTEDIPVKNKSNGVLYVDEEDPENSASGNSSDDGGNSNESEPPSRKRSRKQSLSEENLGEDGGEEIASYPKVDDTHKKRNRSSKENLDSGNSTMVVSKAKMQEAFQPGSTPVQPGKRHFLCYNMLGCITSIEHDGYSHIEIDFHDTGSTPRVPSMTDHFGFTMAAMNESGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVAIGAAWVAAVTSFNYLRIFSEGGLQRDVLSLDGPVVTASGFKDKLAVVTHASDGLSSNDQMLEFMLFNIHRGTQLLQGRLPLSPGSSLSWLGFSEEGQLCSYDSKGVLRSYTSKFGGRWTPLFSATKEKSDENYWVTGLNASKLFCVVCKMPEEFPQAMPKPVLTPLSLSFPLASSDLGSEAHENEFMMNNLHLYEIQRRMDEMAYVGLDTTSLDDDAFNLEAAQDKCILRLIASCCNSDKLVRATELVKLLTLEKSMRGAIKLVTALKLPNLAERLLEEAKKTMETNIKENSVAPISPDALPSRSNKAPPTRTETLNAVTMSSSPKLSAPSFMRKEKTQEGAKAGTSKTAMVNETLKVKQKGDEASNTAMLNDPSTKSSNKSGLNKSETSLGQSNRPSNPLLKSETGMGQSSNRPSNPFLKATIK 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1163 958 Pfam Minichromosome loss protein, Mcl1, middle region 424 705 IPR022100 -
Aed10g1163 958 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 103 IPR001680 GO:0005515
Aed10g1163 958 MobiDBLite consensus disorder prediction 821 958 - -
Aed10g1163 958 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 94 - -
Aed10g1163 958 Gene3D - 199 328 IPR015943 GO:0005515
Aed10g1163 958 Pfam WD domain, G-beta repeat 235 270 IPR001680 GO:0005515
Aed10g1163 958 Pfam WD domain, G-beta repeat 60 93 IPR001680 GO:0005515
Aed10g1163 958 Pfam WD domain, G-beta repeat 144 177 IPR001680 GO:0005515
Aed10g1163 958 MobiDBLite consensus disorder prediction 343 358 - -
Aed10g1163 958 MobiDBLite consensus disorder prediction 339 412 - -
Aed10g1163 958 SMART WD40_4 181 227 IPR001680 GO:0005515
Aed10g1163 958 SMART WD40_4 139 178 IPR001680 GO:0005515
Aed10g1163 958 SMART WD40_4 230 270 IPR001680 GO:0005515
Aed10g1163 958 SMART WD40_4 1 51 IPR001680 GO:0005515
Aed10g1163 958 SMART WD40_4 97 136 IPR001680 GO:0005515
Aed10g1163 958 SMART WD40_4 55 94 IPR001680 GO:0005515
Aed10g1163 958 SMART WD40_4 273 311 IPR001680 GO:0005515
Aed10g1163 958 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 238 272 - -
Aed10g1163 958 MobiDBLite consensus disorder prediction 386 405 - -
Aed10g1163 958 ProSitePatterns Trp-Asp (WD) repeats signature. 257 271 IPR019775 -
Aed10g1163 958 CDD WD40 35 314 - -
Aed10g1163 958 MobiDBLite consensus disorder prediction 898 958 - -
Aed10g1163 958 SUPERFAMILY WD40 repeat-like 29 311 IPR036322 GO:0005515
Aed10g1163 958 MobiDBLite consensus disorder prediction 837 862 - -
Aed10g1163 958 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 187 IPR001680 GO:0005515
Aed10g1163 958 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 928 - -
Aed10g1163 958 Gene3D - 3 198 IPR015943 GO:0005515
Aed10g1163 958 ProSiteProfiles Trp-Asp (WD) repeats profile. 238 279 IPR001680 GO:0005515
Aed10g1163 958 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 183 - -
Aed10g1163 958 MobiDBLite consensus disorder prediction 359 377 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1163 61 276 Miscellaneous Gene Families AT5G08390 22.936 4.32e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1163 K11274 - gmx:100818807 1665.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1163 10 10970515 10975582 Aed10g1163 10 10970515 10975582 ECH