Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1145 ATGGATAACAGTAGTAATTCCGAACAAACCGTTCAAGAAGGAAAACTCTACAGACACCTCAATTCTCTCATCGTTGCTCATCTTCGCGACAACAATCTCACTCAGGCAAAACCCCAATCTTCTTGTTTATTTATCTTCAAAATCAAATCTTTTTTATTTTTATTATTATTTAAAAATGAATATAAAATCGTATTGTTGTTTTTTCTTCATTCATTCAGGCTGCAAGGTCTTGCAGTGGAAAAAGGCGACATCACAAGGGGCACTGATTTCGCTGCGTCACTGCCCCTGCCTCACTCAACTGCTATTGATTTCAGGCAAACTTCCAAATCGACATTTCTATTTATTATGAAACATAATTTTTCTGTGCCTGATATGAAAGGTTCCTCAAAGAGCTTCCCAAAGCACGAAACACGACACCTTTCGGAACACAAGAATATTGCCAGATGCGCGAGGTTTAGTGCTGATGGAAGGTTTGTTGCCACTGGAAGTGCAGATACATCAATAAAGCTATTTGAGGTTTCAAAGATCAAGCAGATGTTGCTCCCAGAGGCAAAGGATGGTCCTGTGCGTCCTGTCATACGAACATATTATGATCATATACAACCAATAAATGATCTGGATTTTCATCCACAAGGTACTATTCTGATTTCTGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAAACAAATGCAAAGAGAGCAAACAAGGTTATCCAGGACACACACAATGTTCGATCTGTATCTTTTCATCCTTCTGGAGACTTTCTGCTGGCAGGAACTGATCATGCAATTCCACATTTGTATGATGTAAACACGTTTCAGTGTTATCTGTCAGCAAACATCCCAGAGACTAGCCCTAATGGAGCCATAAACCAGGCATGTCAATTATCTCTTAGGCAATATTCTAGTACAGGTGCCATGTATGTTACAGCATCTAAAGATGGTGCTATTCGGTTGTGGGATGGCATCACTGCCAATTGTGTGCGCTCAATAACTGCAGCACATGGAACTGCTGAGGCTACCAGTGCAATATTTACAAAAGATCAAAGGTTTGTTCTCTCCTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTTGGCTCTGGAAGATTAGTCAAACAATATCTGGGAGCTATGCATACCCAGCTAAGGTGCCAGGCTATTTTTAACGAGACGGAAGAATTTATTTTATCCATAGATGAACTGAGCAATGAGATCGTTACCTGGGATGCAATGACGACAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTTGGTGCACCCCGCTGGCTTGAACACTCGCCAGTAGAGTCTGCTTTTATTTCCTGTGGAACTGATAGATCAATTCGGTTCTGGAAGGAAACTGTATAA 1380 0.4043 MDNSSNSEQTVQEGKLYRHLNSLIVAHLRDNNLTQAKPQSSCLFIFKIKSFLFLLLFKNEYKIVLLFFLHSFRLQGLAVEKGDITRGTDFAASLPLPHSTAIDFRQTSKSTFLFIMKHNFSVPDMKGSSKSFPKHETRHLSEHKNIARCARFSADGRFVATGSADTSIKLFEVSKIKQMLLPEAKDGPVRPVIRTYYDHIQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRANKVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDVNTFQCYLSANIPETSPNGAINQACQLSLRQYSSTGAMYVTASKDGAIRLWDGITANCVRSITAAHGTAEATSAIFTKDQRFVLSCGKDSTIKLWEVGSGRLVKQYLGAMHTQLRCQAIFNETEEFILSIDELSNEIVTWDAMTTEKVAKWPSNHVGAPRWLEHSPVESAFISCGTDRSIRFWKETV 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1145 459 CDD WD40 136 456 - -
Aed10g1145 459 Pfam WD domain, G-beta repeat 137 171 IPR001680 GO:0005515
Aed10g1145 459 Pfam WD domain, G-beta repeat 329 367 IPR001680 GO:0005515
Aed10g1145 459 Pfam WD domain, G-beta repeat 193 228 IPR001680 GO:0005515
Aed10g1145 459 Pfam WD domain, G-beta repeat 244 267 IPR001680 GO:0005515
Aed10g1145 459 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 7 458 IPR044633 GO:0005848|GO:0031124
Aed10g1145 459 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 196 230 - -
Aed10g1145 459 PRINTS G protein beta WD-40 repeat signature 215 229 IPR020472 -
Aed10g1145 459 PRINTS G protein beta WD-40 repeat signature 355 369 IPR020472 -
Aed10g1145 459 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Aed10g1145 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 181 IPR001680 GO:0005515
Aed10g1145 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 333 IPR001680 GO:0005515
Aed10g1145 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 237 IPR001680 GO:0005515
Aed10g1145 459 Gene3D - 99 297 IPR015943 GO:0005515
Aed10g1145 459 SUPERFAMILY WD40 repeat-like 132 456 IPR036322 GO:0005515
Aed10g1145 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 377 IPR001680 GO:0005515
Aed10g1145 459 ProSitePatterns Trp-Asp (WD) repeats signature. 355 369 IPR019775 -
Aed10g1145 459 SMART WD40_4 234 272 IPR001680 GO:0005515
Aed10g1145 459 SMART WD40_4 189 228 IPR001680 GO:0005515
Aed10g1145 459 SMART WD40_4 416 456 IPR001680 GO:0005515
Aed10g1145 459 SMART WD40_4 294 324 IPR001680 GO:0005515
Aed10g1145 459 SMART WD40_4 327 368 IPR001680 GO:0005515
Aed10g1145 459 SMART WD40_4 133 172 IPR001680 GO:0005515
Aed10g1145 459 Gene3D - 298 459 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1145 Aed-Chr10 10677642 10682428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1145 193 455 Miscellaneous Gene Families AT5G08390 19.623 4.01e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1145 K14406 - gmx:100809908 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1145 10 10677642 10682428 Aed10g1145 10 10677642 10682428 ECH