Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1117 ATGTTGATTCAGATTCCTCGCCTCACCAACTCTCTCAGAGACCCTTTCGATGTGGACCAGTACTATCTCCATCGCAAAACCATTCTCCACAACCAAAAACCTCGCAATTCTGCAAGTTCGCTTGATGAATCGGAGCTGGCGCGGAAGATTGTGTACGGGTGGGAAGAAGCTTTGTCGGAAGTGCGGCAGGCCTACAAACAGTTTATAGGAGCAGTGGTGGACTTGGTTGACGGAGAAATGCGCTCCGAGGAGTTCCATGAGGTGGCGCTGACTGTGTTTGAGTTACAAAAACTTATTGGACACGCAGTTACTGATGCCAAGTTGAGGCAAGTTGCATCTCTAGCACAGAGAATTTTAAATTTGCAGCCGAGCAATAAAATCTCTACCATTTCTTTTGAAAGAAATCTAGATGCTGATGAGGATTTAGAATTTGGAGCTGATTTGTTTTTTCAAGTACCAGCTCGTTTCTTGGTTGATGTAACCTTAGATGATGGAGATATGATGGATTTTGAAAGCAGTGTTCCATTAGAATTTCACAAAGAACAGTATGGTCATACCATCCCAACAGATCATTCTGGTGTTGACGGGGAAAAGTTCAACCTGACTTGGTTACGAGATGCATGTGATAAAATAGTTAGGAATTGTAATTCCCAGCTATCCCGAGATGAATTGGCAATGGCCATTTGTCAGGTTCTTAATTCAGAAAAGCCTGGTGAAGAGATAGCTGGAGATTTGTTGGATCTTGTTGGCGATAATGCATTTGAAACCGTGCAAAATTTTTTATTGCACCGAAAGGAGATTGTTGATTCTATTCATCATGGGTTATTGGTATTGAAGTCTGATAAAAATGCTTCAAATGCTCAGTCTCGCATGCCCAGTTATGGAACACAGGTGACTGTTCAAACAGAATCAGAAAAGCAAATTGACAAGCTTCGGCGCAAGGAGGAAAAACGAAATAGACGGGGAATAGAACATGCTGGTGATGGTGAATTGTCTGCACTGGATTTCTCATCTCTACTTCAAGCAAGTGAGAGGAAAAAAATGTTTGATGAGATGATTGGTTCTGGAGATAAGTCTGAGTCAATAGCTGTTACTGCTCTTCCTGAAGGAACTGTAAGGAAGCATTTTAAGGGGTATGAAGAGGTTGATATTCCCCCCAAACTAACTGCACCACTGAAACCTGGGGAAAAGCTGATTGAAATCAGTGAGTTAGATGACTTTGCACAAGCTGCGTTCCGTGGGTACAAATCACTTAATCGCATTCAGAGCAGGATTTTTCCAACTGTTTATGGAACTAATGAGAATATTTTAGTGTGTGCTCCCACAGGAGCGGGCAAAACTAACATAGCTATGATTTCAATTTTACATGAGATTGGACAACACTTCAGGGATGGTTACTTGCATAAAGATGAATTTAAGGTAGTTTATGTTGCTCCAATGAAGGCTTTGGCTGCAGAAGTCACATCAACATTCAGCCAACGTTTATCTCCTTTGAATATGATTGTCAGAGAGCTTACGGGAGATATGCAGCTCTCTAAAAATGAACTTGAAGAAACTCAGATGATAGTGACAACACCTGAGAAATGGGATGTCATCACACGCAAAAGCAGTGACATGTCATTGTCTATGCTGGTGAAGCTCTTAATTATTGATGAAGTCCATCTACTCAATGATGATAGAGGTCCTGTGATAGAGGCTCTAGTTGCCAGGACCCTACGGCAGGTGGAATCTACTCAGACAATGATACGTATTGTGGGCCTTTCGGCAACTCTTCCCAATTACTTGGAGGTTGCACAATTTCTCAGAGTAAATCCAGACGCAGGTCTTTTCTTCTTTGATTCTAGTTATCGTCCAGTGCCTCTTGCACAACAATATATTGGAATTAGTGAGCCAAACTTTGCAGCTCGTAATGAATTGTTGAATGAAATATGCTATAAAAAGGTTGCTGATTCTCTTAGGCAAGGCCATCAGGCGATGGTGTTTGTCCATTCACGAAAGGACACTGCAAAGACAGCTGATAAACTGGTTGAACTAGCACGAAGGAATGAGGATTTCGAACTTTTTAGTAATAATACACATCCACAATATACCTTTATGAAGAAAGAAGTCATTAAATCCAGAAACAAAGATCTTGTGCAACTTTTTGAATATGGTGTGGGTGTACATCATGCTGGGATGCTACGTGCAGATAGAGGACTTACTGAGCGGCTTTTCTCTGATGGACTTCTGAAGGTTCTTGTCTGTACAGCAACTTTGGCATGGGGTGTCAATCTACCTGCACACACGGTTGTCATTAAGGGTACCCAATTATATGATCCAAAAGCTGGTGGGTGGCGAGACCTGGGTATGCTTGATGTTATGCAGTTTGACAAAAGTGGTGAAGGTATCATAATTACATCTCATGACAAACTATCATATTATCTGCGACTGCTGACAAGCCAACTCCCTATAGAAAGCCAGTTTATTAGCTCCTTGAAAGATAATTTAAATGCAGAGGTGGCATTGGGTACTGTAACTAATGTTAAGGAAGCCTGTGCATGGCTTGGCTATACATATCTTTTCATAAGGATGAGGATGAATCCTTTGGCATATGGTATTGGGTGGGATGAGGTGATGGCAGATCCTGCTTTGAGTTCTAAGCAAAGATCTCTTGTAATTGATGCTGCACGTTCACTTGATAAAGCAAAAATGATGCGGTTTGATGAGAAAAGTGGCAATTTTTATTGTACTGAGCTTGGTCGCATTGCAAGCCATTTTTACATTCAATATTCCAGTGTTGAAACGTACAATGAAATGTTGAGACGCCACATGAATGACAGTGAGGTGATTAACATGATTGCACATTCATCTGAATTTGAGAATATTGCTGTTCGAGAAGAAGAGCAGAATGAGCTAGAGATGTTGGCACGCAAATCATGTCCATTAGAAATTAAGGGTGGTCCTTCCAATAAACAGGGAAAGATTTCCATTTTGATTCAGTTGTACATATCTCGAGGTTCTATAGATTCTTTTTCTTTAATATCTGATGCTTCATATATAAGTGCAAGCTTGGCTCGAATAATGCGGGCATTATTTGAGATTTGCTTACGAAGAGGCTGGTGTGAGATGTCTTTGTTCATGTTGGAATATTGCAAAGCTGTGGATCGTCAAGTTTGGCCGCATCTACATCCTCTTAGACAATTTGACAAGGACCTTTCTGCAGAAATATTGCGGAAGCTTGAAGAACGTGGGGCGGACCTAGATCGCTTGTTTGAGATGGAGGAAAAAGACATTGGGGCATTAATTCGTTATGCGCCTGGAGGAAGGTTGGTCAAGCAATCCCTAGGGTATTTTCCATCACTTCAGTTATCAGCAACTGTTAGTCCAATTACCAGAACTGTGTTGAAGGTTGATTTGGTCATTACTCCTGATTTCATTTGGAAAGATCGTTTTCATGGTACTGCTCAACGTTGGTGGATTTTGGTAGAGGATTCTGAGAATGATCACATCTACCACTCGGAACTCTTTACGCTGACAAAGCGGATGGCTAGGGGCGAACCTTACAAGCTTTCTTTCACTGTACCAATATTTGAACCACATCCACCACAATATTACATTCACGCCATCTCTGATTCCTGGCTTCATGCAGAGGCATTCTACACTATTACTTTTCACAATTTACCATTGCCAGAGGCTCGGACTGCTCACACAGAACTCCTTGATTTAAAGCCTCTTCCTGTGTCTTCCCTTGGCAACAGTACTTATGAAGCATTATATAAATTTTCACATTTTAATCCGATACAAACACAGACTTTTCATGTCTTGTATCACACGGAAAATAATGTTCTGTTAGGAGCTCCAACTGGAAGTGGAAAAACTATATCTGCTGAGCTTGCTATGCTTCATCTTTTCAATACTCAGCCTGATATGAAGGTTATTTATATAGCTCCTTTGAAAGCTATTGTCAGGGAAAGAATGAGTGATTGGAAAAAGCGTCTTGTCTCTCAGCTAGGGAAAAAAATGGTTGAAATGACTGGAGACTATACTCCTGATTTGACGGCTCTCTTGTCAGCTAATATCATCATATCTACTCCTGAAAAGTGGGATGGAATAAGTCGCAATTGGCACAGCCGTAGCTATGTCACAAAGGTTGGACTTGTGATATTGGATGAGATTCACTTATTGGGAGCTGATCGTGGGCCCATTCTTGAGGTTATTGTTTCTAGGATGAGATACATATCATCCCAAACAGAGCGTGCAGTACGGTTTGTAGGCCTTTCTACAGCCCTGGCCAATGCTGGTGATCTAGCTGATTGGTTAGGCGTCGAGGAAATTGGACTCTTCAATTTCAAGCCAAGTGTGAGGCCTGTACCCCTGGAAGTTCATATTCAGGCAAGTGGATTTGGTGTTCCACATAGATCAATAGATCAGGCCTTAACATGTCCATTTCTTTGTGGCTATCCTGGAAAGTATTACTGCCCCAGGATGAATAGCATGAATAAACCAGCATATGCTGCAATATGCACACATTCATCTGCAAAACCAGTTCTTATATTTGTCTCATCACGACGTCAGACAAGACTTACTGCACTTGACCTAATTCAGTTTGCTGCCTCAGATGAACAATCAAGACAATTCCTTAATTTGCCAGAAGAAACGCTGCAGATGGTTCTGTCTCAAGTCTCTGACCAAAACCTGAGGCATACTTTACAATTTGGCATTGGATTACATCATGCAGGCCTGAATGATAAAGACAGATCTCTGGTTGAGGAACTTTTTGCAAACAACAAAATTCAGGCATACATTTATATTGGTTTGTACCAGCACATTGGCTTGGGGTGTGAATCTTCCAGCTCATCTAGTGATTATCAAGAATACTACGATGGAAAAACAAAGAGGTATGTTGATTTTCCAATCACTGATATTTTGCAAATGATGGGACGTGCTGGACGGCCTCAATTTGATCAACATGGGAAAGCAGTGATTCTTGTTCATGAACCCAAGAAGAGCTTCTATAAAAAGTTCTTGTATGAACCCTTCCCTGTTGAGAGTAGTTTGAGGGAGCAATTGCATGATCACATTAATGCCGAAATTATTTCTGGAACCATTTGTCATAAACAAGATGCAGTGCATTATCTTACATGGACTTACTTATTCCGTAGACTGATGGTTAATCCTGCTTACTATGGATTGGAGAATGTTGATTCTGAATTTCTAAATACATATTTGTCCAGCCTAGTACAGACCACATTTGAGGATTTGGAAGACAGTGGATGCATAAAGATGGATGAAGACAAGGTGGAGTCCATGATGTTGGGTTCAATTGCATCTCAGTATTACCTCAGCTACATGACTGTATCTATGTTTGGTTCAAACATAGGTCCAGATACATCACTTGAAGTCTTTTTGCATATCTTATCTGCTGCTTCTGAATTTGATGAACTACCTGTGCGTCATAATGAGGAAAAATTCAATGAAGGACTATCTGAGAAAGTTAAATATCCAGTGGATAAGAACCGTTTAGATGACCCCCACATCAAAGCACTTCTTCTATTTCAGGCTCATTTTTCTCAATTGGAGTTACCAATTAGTGACTATGTCACAGACTTGAAATCAGTATTAGATCAGAGTATACGCATAATTCAGGCCATGATTGATATATGTGCAAACAGTGGATGGCTTTCAAGCTCAATTACATGCATGCGTCTTCTGCAAATGGTCATGCAGGGTTTGTGGTTTGACAAGGACTCTTCCTTATGGATGCTGCCGTGCATGAATACAGATTTGATAAGTTCACTTAGCAGAAAAGGAATTTCTAGTGTACAGGAATTACTAGACATTCCCAAAGCAGCATTGCAGAATGTGACTGCAAATTTCCCAGCTTCAAGATTGTACCAGGATCTACAACACTTCCCTAATGTTAAAATGAAATTAAAAGTTCAGAGGAAGGATACTGATGGTGAGAGGTCTCGCACATTATCTATCAGATTAGAGAAGACCAATTCTAGAAGACACTCTTCTAGAGCATTTGTACCTCGATTTCCAAAGATAAAAGAGGAACAATGGTGGTTGGTTCTTGGTAATACCTCTACGTCTGAGCTATATGCTTTGAAAAGAGTTTCTCTTTCAGATCACTTAGTTACCTCAATGAAGTTGCCCCTGACTCCAGCTAATCTTGAGGGTGTAAAACTGATTTTAGTCTCCGATTGTTACATTGGATTTAAACAAGAACACTCCATTGAAGAACTTGATGTTAAGTAG 6240 0.4069 MLIQIPRLTNSLRDPFDVDQYYLHRKTILHNQKPRNSASSLDESELARKIVYGWEEALSEVRQAYKQFIGAVVDLVDGEMRSEEFHEVALTVFELQKLIGHAVTDAKLRQVASLAQRILNLQPSNKISTISFERNLDADEDLEFGADLFFQVPARFLVDVTLDDGDMMDFESSVPLEFHKEQYGHTIPTDHSGVDGEKFNLTWLRDACDKIVRNCNSQLSRDELAMAICQVLNSEKPGEEIAGDLLDLVGDNAFETVQNFLLHRKEIVDSIHHGLLVLKSDKNASNAQSRMPSYGTQVTVQTESEKQIDKLRRKEEKRNRRGIEHAGDGELSALDFSSLLQASERKKMFDEMIGSGDKSESIAVTALPEGTVRKHFKGYEEVDIPPKLTAPLKPGEKLIEISELDDFAQAAFRGYKSLNRIQSRIFPTVYGTNENILVCAPTGAGKTNIAMISILHEIGQHFRDGYLHKDEFKVVYVAPMKALAAEVTSTFSQRLSPLNMIVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNPDAGLFFFDSSYRPVPLAQQYIGISEPNFAARNELLNEICYKKVADSLRQGHQAMVFVHSRKDTAKTADKLVELARRNEDFELFSNNTHPQYTFMKKEVIKSRNKDLVQLFEYGVGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQFDKSGEGIIITSHDKLSYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADPALSSKQRSLVIDAARSLDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVINMIAHSSEFENIAVREEEQNELEMLARKSCPLEIKGGPSNKQGKISILIQLYISRGSIDSFSLISDASYISASLARIMRALFEICLRRGWCEMSLFMLEYCKAVDRQVWPHLHPLRQFDKDLSAEILRKLEERGADLDRLFEMEEKDIGALIRYAPGGRLVKQSLGYFPSLQLSATVSPITRTVLKVDLVITPDFIWKDRFHGTAQRWWILVEDSENDHIYHSELFTLTKRMARGEPYKLSFTVPIFEPHPPQYYIHAISDSWLHAEAFYTITFHNLPLPEARTAHTELLDLKPLPVSSLGNSTYEALYKFSHFNPIQTQTFHVLYHTENNVLLGAPTGSGKTISAELAMLHLFNTQPDMKVIYIAPLKAIVRERMSDWKKRLVSQLGKKMVEMTGDYTPDLTALLSANIIISTPEKWDGISRNWHSRSYVTKVGLVILDEIHLLGADRGPILEVIVSRMRYISSQTERAVRFVGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEVHIQASGFGVPHRSIDQALTCPFLCGYPGKYYCPRMNSMNKPAYAAICTHSSAKPVLIFVSSRRQTRLTALDLIQFAASDEQSRQFLNLPEETLQMVLSQVSDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQAYIYIGLYQHIGLGCESSSSSSDYQEYYDGKTKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREQLHDHINAEIISGTICHKQDAVHYLTWTYLFRRLMVNPAYYGLENVDSEFLNTYLSSLVQTTFEDLEDSGCIKMDEDKVESMMLGSIASQYYLSYMTVSMFGSNIGPDTSLEVFLHILSAASEFDELPVRHNEEKFNEGLSEKVKYPVDKNRLDDPHIKALLLFQAHFSQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMRLLQMVMQGLWFDKDSSLWMLPCMNTDLISSLSRKGISSVQELLDIPKAALQNVTANFPASRLYQDLQHFPNVKMKLKVQRKDTDGERSRTLSIRLEKTNSRRHSSRAFVPRFPKIKEEQWWLVLGNTSTSELYALKRVSLSDHLVTSMKLPLTPANLEGVKLILVSDCYIGFKQEHSIEELDVK 2079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1117 2079 PIRSF BRR2 163 2079 - -
Aed10g1117 2079 PANTHER SEC63 DOMAIN-CONTAINING 407 448 - -
Aed10g1117 2079 Pfam Sec63 Brl domain 909 1215 IPR004179 -
Aed10g1117 2079 MobiDBLite consensus disorder prediction 305 326 - -
Aed10g1117 2079 SUPERFAMILY E set domains 1984 2073 IPR014756 -
Aed10g1117 2079 SUPERFAMILY "Winged helix" DNA-binding domain 1674 1774 IPR036390 -
Aed10g1117 2079 Pfam DEAD/DEAH box helicase 420 593 IPR011545 GO:0003676|GO:0005524
Aed10g1117 2079 SUPERFAMILY Sec63 N-terminal domain-like 1795 1949 - -
Aed10g1117 2079 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 427 609 IPR014001 -
Aed10g1117 2079 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 639 845 IPR001650 -
Aed10g1117 2079 Gene3D - 406 617 IPR027417 -
Aed10g1117 2079 Pfam DEAD/DEAH box helicase 1259 1423 IPR011545 GO:0003676|GO:0005524
Aed10g1117 2079 Gene3D - 910 1052 - -
Aed10g1117 2079 Gene3D - 1676 1769 IPR036388 -
Aed10g1117 2079 SUPERFAMILY "Winged helix" DNA-binding domain 816 921 IPR036390 -
Aed10g1117 2079 MobiDBLite consensus disorder prediction 286 304 - -
Aed10g1117 2079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1443 1674 IPR027417 -
Aed10g1117 2079 Gene3D - 1472 1675 IPR027417 -
Aed10g1117 2079 Gene3D - 618 811 IPR027417 -
Aed10g1117 2079 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 407 448 - -
Aed10g1117 2079 SMART Sec63_2 909 1217 IPR004179 -
Aed10g1117 2079 SMART Sec63_2 1762 2075 IPR004179 -
Aed10g1117 2079 Gene3D - 1222 1448 IPR027417 -
Aed10g1117 2079 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1266 1441 IPR014001 -
Aed10g1117 2079 Gene3D C2 domain 1965 2079 IPR035892 -
Aed10g1117 2079 Gene3D C2 domain 1111 1220 IPR035892 -
Aed10g1117 2079 SMART ultradead3 414 625 IPR014001 -
Aed10g1117 2079 SMART ultradead3 1253 1457 IPR014001 -
Aed10g1117 2079 SMART AAA_5 432 613 IPR003593 -
Aed10g1117 2079 SMART AAA_5 1271 1442 IPR003593 -
Aed10g1117 2079 CDD SF2_C_Ski2 1448 1658 - -
Aed10g1117 2079 Gene3D - 818 908 IPR036388 -
Aed10g1117 2079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1143 1441 IPR027417 -
Aed10g1117 2079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 602 IPR027417 -
Aed10g1117 2079 SMART helicmild6 705 782 IPR001650 -
Aed10g1117 2079 SMART helicmild6 1557 1646 IPR001650 -
Aed10g1117 2079 CDD DEXHc_ASCC3_1 417 613 - -
Aed10g1117 2079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 816 IPR027417 -
Aed10g1117 2079 Pfam Sec63 Brl domain 1763 2073 IPR004179 -
Aed10g1117 2079 MobiDBLite consensus disorder prediction 286 326 - -
Aed10g1117 2079 CDD SF2_C_Ski2 617 799 - -
Aed10g1117 2079 Gene3D - 1055 1108 - -
Aed10g1117 2079 Gene3D - 1770 1906 - -
Aed10g1117 2079 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 448 2075 - -
Aed10g1117 2079 PANTHER SEC63 DOMAIN-CONTAINING 448 2075 - -
Aed10g1117 2079 CDD DEXHc_ASCC3_2 1256 1444 - -
Aed10g1117 2079 SUPERFAMILY Sec63 N-terminal domain-like 937 1112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1117 Aed-Chr10 10254608 10298556 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1117 K18663 - gmx:100811503 3846.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1117 10 10254608 10298556 Aed10g1117 10 10254608 10298556 ECH