Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1101 ATGACGAAGACCCGGAACCCAAATCGAACAGAAAATCTCCCCTTCCAGGTCCCAATTGGGAAAAACAAATCCGCGAAGCACGACCGCCTCTCCGCAAAACCTTCCCCTCCGTTCTCCCCGGTTCACACCGACCAGATCCGCTCCATCCCCCGCACCGTACCGTGCGTCACCGTCGGCGCTGCGAGTGTAGTGCTTTGCAACTTGACAATGGGGAGCGATGACGGTCTTAAGACATGGGTATCAGATAAGTTGATGTCTCTACTGGGATATTCTCAGCCCACAGTTGTCCAGTACATGATTGGACTATCCAAGCAAGCTACTTCTCCAGCTGATTTGGCGGGCAAACTAGTGGAGTTCGGGATCTCGTCAACGGACACTCATGCATTTGCAGAAGAAATTTACTCAAGAGTTCCTCGTAAATCATCTGGTATAAATCAATATCAGAAACAAGAAAGAGAAGCTGCAATGTTGGCGAGGAAGCAGAAGACTTACACAATTTTGAAGGCTGACGATGACGATAGTGATGATGACCATGTAGATAAATCTTCAGTAATTTCGAGAAAGGAAAGGGAGAGACAAGTTAAGAGAAGAACTTCCCCTGATGAAGATAATGATTCAGAGTCAGAAGAAGAAAGATTGAAAGATCAAAGAGAGAAGGAGGAATTAGAGCAGCATATGAGAGAAAGAGATGCAGCAGGGACACGGAAGTTGACTGAACAAAAATTAACACGAAAGGAGGAAGAAGAGGCAATTCGAAGATCTAAGGCTGCAGAGCAGGATGATATTCAAACTCTGAGAAAGGTTTCAAGGCATGAATACTTGAAGAAAAGGGAGGAAAAAAAATTAGAAGAACTGAGCTACAAGAAAGAGATATATCAACTTGTGAAAAAGCGTACAGAGGAGGCTGACAATGCCAATGAGTATAGAATGCCTGAAGCTTATGATCAGGAAGGTGGTGTTAGTCAGGAGAAGAGATTTTCTGTGGCTATGCAGCGTTACAGGGATCTAAATGCTGAGGAAAAGATGAATCCATTTGCTGAACAAGAAGCTTGGGAGGAACATCAAATTGGAAAGGCTACGCTGAAGTTTGGTTCAAAAAATAAAAAACAAGCCTCCGATGAATATCAGTTTGTGTTTGAGGACCAGATTGATTTTATCAAGGCATCGGTAATGGAGGGAGATAAGTTTGATTATGAAGAGATGGAAGATTCACATGAAAAGTCCAAAGCCAAGTCCGCTTTCGAGGCACTTCAGATTGCATGTACTCAGCCACGGCGTGTTGCAGCTATGAGTGTTGCTGCTCGAGTTTCTCAAGAAATGGGTGTTAAATTAGGACATGAGGTTGGTTATTCCATCCGTTTCGAAGATTGTACATCAGAGAAGACTATTCTGAAATACATGACTGATGGAATGTTACTGAGGGAATTTCTTGGTGAGCCTGATCTGGCAAGTTATAGTGTTGTGATGGTGGATGAGGCTCATGAAAGAACACTCTCAACTGATATTCTGTTTGGATTGGTAAAGGTGGGAGAAAATTCTTGTGACGAGCTAAATTTTGCTACTCTTGACGCAGAGAAATTCAGTGATTACTTCGATTCTGCGCCAATATTCAAAATCCCAGGGAGACGATATCCTGTTGAAATAAATTATACAAAGGCTCCAGAAGCGGACTACTTAGATGCCGCTATTGTCACGTCACTTCAAATCCATGTCACTCAGCCTCCTGGAGATATATTGATTTTCCTTACTGGTCAAGAAGAAATTGAAACAGCAGAAGAAATCTTGAAGCATCGAACTAGAGGCTTGGGGACTAAAATTGCCGAGTTAATAATATGCCCTATTTATGCCAATCTTCCAACTGAACTACAAGCTAAAATATTTGAACCCACTCCTGAAGGAGCGCGAAAGGTTGTCCTTGCAACTAATATTGCAGAAACATCATTGACAATTGATGGGATCAAATATGTCATTGACCCAGGATTCTGTAAGATGAAAAGTTATAATCCAAGAACAGGAATGGAGTCTTTGCTAGTAACTCCCATCTCAAAAGCTTCAGCAAATCAAAGAGCTGGTCGTTCGGGAAGAACGGGTCCTGGAAAGTGCTTCCGACTGTATACTGCATACAATTTTCACAATGATTTGGACGATAACACTGTACCAGAAATACAGCGGACTAACCTTGCAAATGTAGTTTTGACTTTAAAAAGTCTTGGTATTCATGATTTATTGAACTTTGATTTTATGGATCCTCCACCTGCTGAGGCCTTATTGAAAGCTTTGGAGCTTCTATTTGCATTAAGTGCGTTGAATAAGCTTGGTGAGTTAACTAAGGTGGGTAGACGAATGGCAGAGTTCCCACTTGATCCTATGCTGTCAAAAATGATAGTGGCTTCAGAAAATTACAAGTGTTCAGAAGATATCATTTCTATTGCTGCTATGCTTTCTGTTGGAAACTCAATATTTTACCGTCCAAAAGATAAACAAGTACACGCAGACAATGCAAGGATGAATTTTCACACTGGAAATGTTGGAGACCATATTGCGCTGCTAAAGGTCTTCAATTCATGGAAGGAGACGAATTATTCAACGCAATGGTGTTATGAGAATTATATACAGGTAAGGAGTATGAAACAGGCTAGGGATATCCGTGATCAACTAGCAGGCCTTTTAGAGAGGGTTGAGATTGAATTAACTTCAAATGATAATGATTTAGATGGCATCAAGAAATCCATTACATCTGGATTTTTCCCACACTCTGCACGCCTGCAAAAGAATGGATCATATCGAACTGTAAAACATTCACAGACTGTTCACATACATCCTAGTTCAGGACTGGCACAGGTTCTTCCTAGATGGGTTGTATACTATGAGTTAGTACTCACAACCAAGGAATATATGAGACAGATGACAGAGTTAAAGCCAGATTGGTTGGTGGAGATAGCCCCCCACTATTACCAGCTTAAGGACGTTGAAGACTCATCTTCCAAGAAAATGCCTCGTGGAGCAGGACTTGCATCATAG 3021 0.4174 MTKTRNPNRTENLPFQVPIGKNKSAKHDRLSAKPSPPFSPVHTDQIRSIPRTVPCVTVGAASVVLCNLTMGSDDGLKTWVSDKLMSLLGYSQPTVVQYMIGLSKQATSPADLAGKLVEFGISSTDTHAFAEEIYSRVPRKSSGINQYQKQEREAAMLARKQKTYTILKADDDDSDDDHVDKSSVISRKERERQVKRRTSPDEDNDSESEEERLKDQREKEELEQHMRERDAAGTRKLTEQKLTRKEEEEAIRRSKAAEQDDIQTLRKVSRHEYLKKREEKKLEELSYKKEIYQLVKKRTEEADNANEYRMPEAYDQEGGVSQEKRFSVAMQRYRDLNAEEKMNPFAEQEAWEEHQIGKATLKFGSKNKKQASDEYQFVFEDQIDFIKASVMEGDKFDYEEMEDSHEKSKAKSAFEALQIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVKVGENSCDELNFATLDAEKFSDYFDSAPIFKIPGRRYPVEINYTKAPEADYLDAAIVTSLQIHVTQPPGDILIFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLVTPISKASANQRAGRSGRTGPGKCFRLYTAYNFHNDLDDNTVPEIQRTNLANVVLTLKSLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASENYKCSEDIISIAAMLSVGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVFNSWKETNYSTQWCYENYIQVRSMKQARDIRDQLAGLLERVEIELTSNDNDLDGIKKSITSGFFPHSARLQKNGSYRTVKHSQTVHIHPSSGLAQVLPRWVVYYELVLTTKEYMRQMTELKPDWLVEIAPHYYQLKDVEDSSSKKMPRGAGLAS 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1101 1006 Pfam Helicase conserved C-terminal domain 570 697 IPR001650 -
Aed10g1101 1006 Pfam Helicase associated domain (HA2) 759 833 IPR007502 GO:0004386
Aed10g1101 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 888 IPR027417 -
Aed10g1101 1006 MobiDBLite consensus disorder prediction 169 203 - -
Aed10g1101 1006 Gene3D - 363 542 IPR027417 -
Aed10g1101 1006 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 907 984 IPR011709 -
Aed10g1101 1006 MobiDBLite consensus disorder prediction 1 43 - -
Aed10g1101 1006 Coils Coil 203 223 - -
Aed10g1101 1006 PANTHER OS05G0389800 PROTEIN 180 399 - -
Aed10g1101 1006 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 486 495 IPR002464 -
Aed10g1101 1006 SMART helicmild6 589 697 IPR001650 -
Aed10g1101 1006 SMART ha2_5 758 850 IPR007502 GO:0004386
Aed10g1101 1006 PANTHER ATP-DEPENDENT RNA HELICASE 415 1001 - -
Aed10g1101 1006 PANTHER ATP-DEPENDENT RNA HELICASE 180 399 - -
Aed10g1101 1006 PANTHER OS05G0389800 PROTEIN 415 1001 - -
Aed10g1101 1006 SMART ultradead3 340 549 IPR014001 -
Aed10g1101 1006 Coils Coil 876 896 - -
Aed10g1101 1006 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 563 738 IPR001650 -
Aed10g1101 1006 Gene3D - 742 900 - -
Aed10g1101 1006 CDD SF2_C_RHA 544 705 - -
Aed10g1101 1006 MobiDBLite consensus disorder prediction 1 17 - -
Aed10g1101 1006 Gene3D - 543 718 IPR027417 -
Aed10g1101 1006 MobiDBLite consensus disorder prediction 169 259 - -
Aed10g1101 1006 MobiDBLite consensus disorder prediction 210 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1101 Aed-Chr10 10051138 10066613 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1101 K12813 - gmx:100809559 1628.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1101 10 10051138 10066613 Aed10g1101 10 10051138 10066613 ECH