Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1100 ATGGGATGTTTTGCCAGCAAAAACGCCGACACCAAGGCCAGTAGAACCGCGCGTTGGCGATCCACAGGCATTGTTGCTTTGCGCGATTCCAAATTAAAGTCGTTTCCAGATGAAATTCTCGAGTTAGACAGATCTGTTCGCACTCTTGATTTGACGCATAATCGAATAGTTGACATTCCGGTGGAAATCAGCAAATTAATTAATGTACAGCGTCTGATATTAGCGGAGAACCTCATTGAGAGACTGCCAGTGAATTTGGGGAAACTCCAATCTCTGAAACTGATGAACCTGGATGGAAATCGAATTAGTTCCTTGCCTGATGAATTGGGCCAGTTAGTAAGGCTTGAGCGCATATCCATCTCAGGGAATTTGTTAACATCCTTGCCAGCAACTATTGGAAGTTTGAGAAATCTGGTGATTTTAAATGTGTCAAATAACAAGTTACAGTCTCTTCCAGAATCTGTTGGGAGTTGCTTCTCTTTGGAAGAATTACAAGCTAATGTTGCACCATCTTTCTTTCTATTTGTCTTTATGTTGTGTTTGAATGAAGCTAATTCCAACCATTTTGTGAACATTTCAGATAATCTTGTTGAAGATCTTCCCTCTTCGGTGTGCAATCTCTCTCACTTGAAGTCACTTTGCTTGGATAACAATAATGTGAAGCAGATGCCTCTGAATTTGTTGAAAGACTGCAAAGCTCTTCAGAACATAACATTGCATGGTAATCCGATATCAATGGATCAATTTCAGCAGATGGAGGGGTTTCAAGAGTTTGAAGCAAGGAGGAAAAAGAAGTTTGACAAACAAATTGATTCAAATGTGATGATTGGTTCCAAAGGTCTTGATGAAGGTGTTGATATATAA 864 0.3981 MGCFASKNADTKASRTARWRSTGIVALRDSKLKSFPDEILELDRSVRTLDLTHNRIVDIPVEISKLINVQRLILAENLIERLPVNLGKLQSLKLMNLDGNRISSLPDELGQLVRLERISISGNLLTSLPATIGSLRNLVILNVSNNKLQSLPESVGSCFSLEELQANVAPSFFLFVFMLCLNEANSNHFVNISDNLVEDLPSSVCNLSHLKSLCLDNNNVKQMPLNLLKDCKALQNITLHGNPISMDQFQQMEGFQEFEARRKKKFDKQIDSNVMIGSKGLDEGVDI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1100 287 PANTHER LEUCINE-RICH REPEAT-CONTAINING 192 279 - -
Aed10g1100 287 Pfam Leucine rich repeat 44 102 IPR001611 GO:0005515
Aed10g1100 287 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Aed10g1100 287 SMART LRR_typ_2 44 65 IPR003591 -
Aed10g1100 287 SMART LRR_typ_2 66 88 IPR003591 -
Aed10g1100 287 SMART LRR_typ_2 135 158 IPR003591 -
Aed10g1100 287 SMART LRR_typ_2 112 134 IPR003591 -
Aed10g1100 287 SMART LRR_typ_2 89 111 IPR003591 -
Aed10g1100 287 SMART LRR_typ_2 207 230 IPR003591 -
Aed10g1100 287 ProSiteProfiles Leucine-rich repeat profile. 45 66 IPR001611 GO:0005515
Aed10g1100 287 SMART LRR_bac_2 135 154 - -
Aed10g1100 287 SMART LRR_bac_2 89 108 - -
Aed10g1100 287 SMART LRR_bac_2 207 226 - -
Aed10g1100 287 SMART LRR_bac_2 112 131 - -
Aed10g1100 287 PANTHER LEUCINE-RICH REPEAT-CONTAINING 2 167 - -
Aed10g1100 287 Gene3D Ribonuclease Inhibitor 10 172 IPR032675 -
Aed10g1100 287 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN-RELATED 192 279 - -
Aed10g1100 287 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN-RELATED 2 167 - -
Aed10g1100 287 SUPERFAMILY L domain-like 25 247 - -
Aed10g1100 287 Gene3D Ribonuclease Inhibitor 177 279 IPR032675 -
Aed10g1100 287 ProSiteProfiles Leucine-rich repeat profile. 137 158 IPR001611 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1100 59 247 Receptor kinase-like Gene Family AT4G08850 29.630 5.03e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1100 - - gmx:100807758 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1100 10 10043785 10051303 Aed10g1100 10 10043785 10051303 ECH