Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1016 ATGGCTAGCTTGGTGGTAGTGTGCAGCTATGTCCACTGTGACGTGACAGACGAAGAGCAAGTGAAAAACCTCGTGGATTCAACAGTCAACGCTTACGGGCAGCTGGACGTGATGTTCAGCAACGCGGGCATCCTCAGTCCCTCCGACCAGACAATCCTCGACCTCGACCTCTCCGAGTACGACCGCCTCCTGGCCATCAACACGCGGGGAATGGCGGCGAGCGTGAAGCACGCAGCGCGGTCCATGGTGTCGCGGCGCGTGAGGGGAAGCATCGTGTGCACGGCGAGCGTGGCGGCGTCGCACGGCAGCCTGCGCCGCACGGACTACGTGATGTCGAAGCACGCCGTGAAGGGGCTGGTGCGCGCCGCGAGTTTGCAGCTCGGGGCGCACGGCGTCAGGGTGAACTGCGTCTCGCCGAGTGGCTTGGCCACGCCGCTGACACGTGCTGCGCATGCGACGATGGAGACGCGTGAGTTGCAGAAGCAGTACGCGCAGAGCTCCAGGCTCAAAGGTATCGATTTGACACCGAAACATGTGGCGGATGCGGTGCTGTTTCTTGCGTGCGGTGATTCCGAGTTTGTAACCGGACACGATCTTGTGGTGGACGGTGCTTTTGATAGTGCCTAG 627 0.6172 MASLVVVCSYVHCDVTDEEQVKNLVDSTVNAYGQLDVMFSNAGILSPSDQTILDLDLSEYDRLLAINTRGMAASVKHAARSMVSRRVRGSIVCTASVAASHGSLRRTDYVMSKHAVKGLVRAASLQLGAHGVRVNCVSPSGLATPLTRAAHATMETRELQKQYAQSSRLKGIDLTPKHVADAVLFLACGDSEFVTGHDLVVDGAFDSA 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1016 208 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 203 IPR036291 -
Aed10g1016 208 Gene3D - 5 206 - -
Aed10g1016 208 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 97 IPR002347 -
Aed10g1016 208 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 109 128 IPR002347 -
Aed10g1016 208 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 33 44 IPR002347 -
Aed10g1016 208 Pfam Enoyl-(Acyl carrier protein) reductase 10 203 - -
Aed10g1016 208 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 96 124 IPR020904 GO:0016491
Aed10g1016 208 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 7 205 - -
Aed10g1016 208 PRINTS Glucose/ribitol dehydrogenase family signature 83 99 IPR002347 -
Aed10g1016 208 PRINTS Glucose/ribitol dehydrogenase family signature 109 128 IPR002347 -
Aed10g1016 208 PRINTS Glucose/ribitol dehydrogenase family signature 169 189 IPR002347 -
Aed10g1016 208 PRINTS Glucose/ribitol dehydrogenase family signature 33 44 IPR002347 -
Aed10g1016 208 PRINTS Glucose/ribitol dehydrogenase family signature 130 147 IPR002347 -
Aed10g1016 208 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B-LIKE 7 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1016 Aed-Chr10 8937662 8938863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1016 16 202 Acyl Lipid Metabolism Gene Families AT3G55290 24.870 4.81e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1016 - - gmx:100817513 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g1016 10 8937662 8938863 Aed10g1016 10 8937662 8938863 ECH