LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed10g0933	ATGGGGAAGTTCAATTCAAGTTACAGTATTTTTGATTATGGGGTTCTATTAATTCCCTTTATTTTTTTATCATTTCAACTTGCATGGTGTGGCTCCATAGTGAAGTTCCTTCCTGGATTCGAGGGATCCCTTCCTTTTGTTCTTGAAACCGGGTATGTGGGAGTGGGTGAATCAGAGGATGTGCAGGCATTCTACTACTTCATTGAGTCTGAGAACAATCCAAAGGAGGATCCTCTCATGCTTTGGCTTACTGGTGGCCCTGGTTGCTCAACATTTTCTGGCCTTGTCCTTGAAATAGGTCCACTTGCATTTAAAAATGAGGAATATAATGGGAGCCTGCCCACTTTGATATTGAGGCCACAATCATGGACAAAGGTTAGTAGCATTATATTTGTAGACTTGCCTGTTTCCACAGGCTTCACTTATGCCAGAACAGAGCTTGCTGCTCAACGAAGTGACTGGATGTTAGTTCATCAAGTTCATCAATTTCTTAGAAAGTGGTTGATTGATCATCCAAAGTTTTTGTCAAATGAAGTTTACATTGGTGGCGATTCATACTCTGGCCTTACTATTCCTGTAATTGTTCAAGAAATTTCACAAGGTAAAAATCTCGGATACCTGCTGGGAAATCCAGCAACAACTCGAAGGGAAGATAACTATAAAATTCCCTTTGCTCACGGAATGGCACTTATTTCTGATGAGTTATACGAGTCCCTACAAAAAAATTGTAAAGGAGAGTACATGAATGTAGACACCAGAAATGTATTGTGTTCTAGAGATATGGAGTCATTCCATGAGGGAAGTATAGGAAAATGGCATCGTTGTACCTTTAATATACCTAACAAGGAGGATATCCCAAGTAGCTTTGAGTATCATGTAAATCTTAGTAGAAAAGGCTATCGTTCACTCATATACAGCAGTGGCGATCATGACATGAAAGTTACTTTCTTGGGAACTCAAGCATGGATAAGAGCTTTAAACTACTCCATTGTGGATGATTGGAGGCCATGGCATACAAATGACCAAGTTGCAGGATACACAAAAACATACTCCAATCGTATGACATTCGCAACTGTGAAGGGTGGAGGCCACACAGCTCCGGAGTTCAAGCCTGAAGAATGCTTTGCCATGTATCGTAGGTGGATATCTAACAGGGCTTTGTAG	1164	0.4072	MGKFNSSYSIFDYGVLLIPFIFLSFQLAWCGSIVKFLPGFEGSLPFVLETGYVGVGESEDVQAFYYFIESENNPKEDPLMLWLTGGPGCSTFSGLVLEIGPLAFKNEEYNGSLPTLILRPQSWTKVSSIIFVDLPVSTGFTYARTELAAQRSDWMLVHQVHQFLRKWLIDHPKFLSNEVYIGGDSYSGLTIPVIVQEISQGKNLGYLLGNPATTRREDNYKIPFAHGMALISDELYESLQKNCKGEYMNVDTRNVLCSRDMESFHEGSIGKWHRCTFNIPNKEDIPSSFEYHVNLSRKGYRSLIYSSGDHDMKVTFLGTQAWIRALNYSIVDDWRPWHTNDQVAGYTKTYSNRMTFATVKGGGHTAPEFKPEECFAMYRRWISNRAL	387

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed10g0933	387	Gene3D	alpha/beta hydrolase	31	263	IPR029058	-
	Aed10g0933	387	Gene3D	alpha/beta hydrolase	264	387	IPR029058	-
	Aed10g0933	387	PANTHER	1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE	17	270	-	-
	Aed10g0933	387	SUPERFAMILY	alpha/beta-Hydrolases	34	385	IPR029058	-
	Aed10g0933	387	Pfam	Serine carboxypeptidase	38	265	IPR001563	GO:0004185\|GO:0006508
	Aed10g0933	387	PANTHER	1-O-ACYLGLUCOSE:ANTHOCYANIN ACYLTRANSFERASE	270	386	-	-
	Aed10g0933	387	PRINTS	Carboxypeptidase C serine protease (S10) family signature	119	131	IPR001563	GO:0004185\|GO:0006508
	Aed10g0933	387	PRINTS	Carboxypeptidase C serine protease (S10) family signature	132	142	IPR001563	GO:0004185\|GO:0006508
	Aed10g0933	387	PRINTS	Carboxypeptidase C serine protease (S10) family signature	167	192	IPR001563	GO:0004185\|GO:0006508
	Aed10g0933	387	PRINTS	Carboxypeptidase C serine protease (S10) family signature	354	367	IPR001563	GO:0004185\|GO:0006508
	Aed10g0933	387	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	270	386	IPR001563	GO:0004185\|GO:0006508
	Aed10g0933	387	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	17	270	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed10g0933	Aed-Chr10	7906577	7911903	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed10g0933	28	57	Calmodulin-binding Proteins	AT2G22960	73.333	1.19e-07	49.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed10g0933	K16296		-	gmx:100801015	546.199