Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0921 ATGAATGACAACGACACATCCAAAACACGATTTTTGTTTTCTTCGTCAAGTTTCCAAAACCAAGTGGAGAGAGTCGCCAAATTCAGCGAGAGACGAGAAATGAGATTGCGTGCGACGTCGTCCGCCACGATGACCGACTCCGAATCTTCTTCTTCTTCTTCTTCTTCTGCTCCTCTCCAATGGAAGTTCTCTCAAGTAATCGGCCAACGGCTTCCCAACGAGCCTCTCCAAAACGACGACATCATAACCGCCGTTGCGTTCGAGAAGCGCGGCGATTATCTCGCCGTCGGCGATCGAGGTGGACGCGTTATAATATTCGAACGAGACGATCGGAAAAAGAATGCTTCGAATAACCGAAGAAGAGAGTTGGAGCAGCGGGATTTGGCGACCTCACGGCATCCCTTTGATTACCTAAAGAGTGTGGAAATTGAAGAGAAGATTAACAAAGTAAAGTGGTGGATGTCCCACGACAGTTTGCAATTTATTCTTTCAACCAACGACAAAACAATTAAATTGTGGAAGGTTAAGGAACATAAGGTGAAACAAGTTAAAGAAATGGCCCCTCCTTTGTGCTCAGAAAATATGCTTTTGGCTGAAAGAAGTTTCGTACCAGAGCTGGAAACTAAATCTGCTGCTAATGGCTATCGTTTGGAATGGATAGAGAAGGCACCTCAAGATATTGATGGAGAGATTGGTGGAATGGAAGACCCTGTTCGTGCAAAGTGCCAAAAGGTGTATGCTTATGCTCACAGTTTCAATATTAACTCCATCTCAAATAATAGTGATTATGAGACCTTTGTCTCAGCAGACGACCTTAGAATCAATTTGTGGAATCTTGAAGTCAGTGATCAGTGTTTCAATATTATTGACATGAAGCCGTCAAACATGGAGGATCTTACTGAGGTTATAACATCAGCTGAATTTCATCCTTTACATTGTAACCTCCTGGCATATAGCAGCTCACAAGGTTTTATTCGTCTATCTGATTTGCGACATGCAGCAATATGTGACAATGCTTCTAGAATATTTCAACATGGAGAGAATTATGGATCAAAGTCATTTTTTACAGAAATCACTTCTTCCATCTCAGACATAAAGTTTTTAAATGATGGCCACCATCTCATAAGTCGCAATTACATGAATATGAAGCTTTGGGACATGCGTATGGAGTCATCACCAGTCGCAATATTCAAAATTCACGAGCATCTGCGTCCTAAGCTGCCAGAGTTATATAATAATGACTGCATATTTGACAAATTCGAGTGCTGCTTTAGTGGGGATGGACTCCATTTTGCAACTGGTTCTTATAGCAATCTCTTGAGGATATTCTCCCCGGGTTCTGGAAGGCAGGAAGGGGTCAAACTAGAAATTAGAGGAAATTCTGACAGGAAGGCTATCCACCAAGCTAAAAAGTCAAGAGTTAGAAGGCCTTCTCTAAACAACCTAATACCTCGTGGAATTTACCAGCATGCTCACACCGATTCAGAATCTAGTAGAGCTGACTTTTCTTGTAACTTAAGCTCCAAGCTGCTTCATGTAGCATGGCATCCCACATGCAATCTAGTTGCATGTACTGCTGAAAGTAGCCTAATATTCTATTATGCGTAG 1608 0.421 MNDNDTSKTRFLFSSSSFQNQVERVAKFSERREMRLRATSSATMTDSESSSSSSSSAPLQWKFSQVIGQRLPNEPLQNDDIITAVAFEKRGDYLAVGDRGGRVIIFERDDRKKNASNNRRRELEQRDLATSRHPFDYLKSVEIEEKINKVKWWMSHDSLQFILSTNDKTIKLWKVKEHKVKQVKEMAPPLCSENMLLAERSFVPELETKSAANGYRLEWIEKAPQDIDGEIGGMEDPVRAKCQKVYAYAHSFNINSISNNSDYETFVSADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITSAEFHPLHCNLLAYSSSQGFIRLSDLRHAAICDNASRIFQHGENYGSKSFFTEITSSISDIKFLNDGHHLISRNYMNMKLWDMRMESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNLLRIFSPGSGRQEGVKLEIRGNSDRKAIHQAKKSRVRRPSLNNLIPRGIYQHAHTDSESSRADFSCNLSSKLLHVAWHPTCNLVACTAESSLIFYYA 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0921 535 Gene3D - 234 475 IPR015943 GO:0005515
Aed10g0921 535 SUPERFAMILY WD40 repeat-like 78 532 IPR036322 GO:0005515
Aed10g0921 535 MobiDBLite consensus disorder prediction 37 56 - -
Aed10g0921 535 PIRSF PPA2_B55 12 535 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 54 535 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 Coils Coil 106 126 - -
Aed10g0921 535 MobiDBLite consensus disorder prediction 38 56 - -
Aed10g0921 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 306 334 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 86 106 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 250 277 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 417 443 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 391 416 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 504 533 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 363 390 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 121 149 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 150 178 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 278 305 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 335 362 IPR000009 GO:0000159|GO:0019888
Aed10g0921 535 PANTHER OS02G0617600 PROTEIN 54 535 - -
Aed10g0921 535 SMART WD40_4 348 386 IPR001680 GO:0005515
Aed10g0921 535 SMART WD40_4 495 535 IPR001680 GO:0005515
Aed10g0921 535 SMART WD40_4 69 107 IPR001680 GO:0005515
Aed10g0921 535 SMART WD40_4 239 278 IPR001680 GO:0005515
Aed10g0921 535 SMART WD40_4 390 444 IPR001680 GO:0005515
Aed10g0921 535 SMART WD40_4 282 329 IPR001680 GO:0005515
Aed10g0921 535 SMART WD40_4 134 174 IPR001680 GO:0005515
Aed10g0921 535 Pfam WD domain, G-beta repeat 241 278 IPR001680 GO:0005515
Aed10g0921 535 Gene3D - 6 187 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0921 Aed-Chr10 7780703 7786177 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0921 K04354 - gmx:100795137 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0921 10 7780703 7786177 Aed10g0921 10 7780703 7786177 ECH