Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0905 ATGCTGATTACATTTGAATGGCTCCATTCCGAACTCAGCAACCTTTGTAAGTCCCTCTTGAGGGCGAAGCAATTACACGCATTCCTTTTGAAAACCAATCTCTCACAAGACCCCTTTTACGCAACAAAACTTGTTAGGCTCTATGCAGCCAACAACAACATCGGCTCTGCTCGCCATGTCTTTGACAAAACTTCCAACCGAAGTGTCTACCTCTGGAATTCCATGATTCGAGCTTTCGCGCAGTCCCAAAGATTTGTCAATGCAATTTCTCTGTTTAGAACCATGCTTGGGGCTGACATAAGTCCTGATGGTCACACTTATGCTTGTGTTATGCGTGCATGTGCTGACAACTTTGATTTCGGTATGCTAAGACGTGTTCATGGAGGTGCTGTGGCTGCAGGGTTGGGAATGGACCCTGTTTGTTGCAGTGCACTTGTGACTGCTTATTCAAAACTTGGCCTTGTTCATGAAGCGCGTAGAGTGTTCGATGGGATCGCTGAACCAGACTTAGTTTTGTGGAATTCGTTGATTTCTGGTTATGGGGGCTTTGGTCTGTGGGATGTGGGGATGCAGATGTTTAGCGAAATGAGACTTGTTGGGAAGAAGCCTGATGGATATACACTGGCTGGGTTGCTTGTGGGTATTGCGGATTCTGGAGTGCTGAGCATTGGTGAAGGATTGCATTGTTTGAGTCAGAAGACTGGGCTTGATTCTGATTCTCATGTTGGTAGTTTGCTGTCTGGGGAGTACGAGAAGGTGATGCTCTTTTTCAGGAAATTAAACATGGAAAACAAGAAGCCGGATTCTGTTTTGATTGCCAGTGTATTGGCTTCTATTGCTCAGATGGCAAATGTAGGACTCGGATGTGAGGTACATGGTTATGCTCTTCGGCATGGATTGGTATTAGATGTCAGGGTCTCCTCTGCTCTAATAGACATGTATTCAAAGTGTGGTTTCTTGCAGTTGGGAGTTTGTGTTTTCAGGATAATGCCAGAACGCAATATTGTTTCTTATAATTCGGTAATTTTGGGTTTTGGCTTGCATGGACGTGCTTCCGAGGCTTTCAGGATGTTTGACAAGATGCTGGAGAAAGGATTGATACCTGATGAAGCCACATTCTCTTCTCTCCTATGTGCCTGCTGTCATGCTGGACTTGTCAAAGATGGCCGGGAGATTTTCCAAAGAATGAAAGATGAATTTAACATTAGAGCTAGGCCTGAGCACTATCTTTATATGGTGAAGCTCCTTGGCAGTGCTGGGGAGTTGGAAGAGGCTTACAATCTGACCCAGTCCTTACCAGAACCTGTAGACAAGGCTATCCTAGGAGCCTTATTATCATGCTGTAATTCTTGTGGAAATTCTGAGCTGGCAGAAACTGTAGCACAGCAGCTTTTTGAAAGTAGTCCTACTGATAATGTTTACAGGGTTATGCTTTCTAATATTTATGCTGGTGATGGGAGGTGGGATGATGTGAAGAAGTTGAGGGATAAAATAACAGGAGATCTAAGAAAAATGCCCGGACTGAGCTGGATTGAAGCCAGTTAG 1545 0.4453 MLITFEWLHSELSNLCKSLLRAKQLHAFLLKTNLSQDPFYATKLVRLYAANNNIGSARHVFDKTSNRSVYLWNSMIRAFAQSQRFVNAISLFRTMLGADISPDGHTYACVMRACADNFDFGMLRRVHGGAVAAGLGMDPVCCSALVTAYSKLGLVHEARRVFDGIAEPDLVLWNSLISGYGGFGLWDVGMQMFSEMRLVGKKPDGYTLAGLLVGIADSGVLSIGEGLHCLSQKTGLDSDSHVGSLLSGEYEKVMLFFRKLNMENKKPDSVLIASVLASIAQMANVGLGCEVHGYALRHGLVLDVRVSSALIDMYSKCGFLQLGVCVFRIMPERNIVSYNSVILGFGLHGRASEAFRMFDKMLEKGLIPDEATFSSLLCACCHAGLVKDGREIFQRMKDEFNIRARPEHYLYMVKLLGSAGELEEAYNLTQSLPEPVDKAILGALLSCCNSCGNSELAETVAQQLFESSPTDNVYRVMLSNIYAGDGRWDDVKKLRDKITGDLRKMPGLSWIEAS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0905 514 Pfam PPR repeat family 333 382 IPR002885 -
Aed10g0905 514 Pfam PPR repeat family 68 115 IPR002885 -
Aed10g0905 514 Gene3D Tetratricopeptide repeat domain 401 511 IPR011990 GO:0005515
Aed10g0905 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Aed10g0905 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Aed10g0905 514 Pfam PPR repeat 140 163 IPR002885 -
Aed10g0905 514 Pfam PPR repeat 171 197 IPR002885 -
Aed10g0905 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 399 IPR002885 -
Aed10g0905 514 Pfam E motif 453 512 IPR046848 -
Aed10g0905 514 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 243 511 - -
Aed10g0905 514 PANTHER OS01G0545900 PROTEIN 243 511 - -
Aed10g0905 514 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Aed10g0905 514 Gene3D Tetratricopeptide repeat domain 7 123 IPR011990 GO:0005515
Aed10g0905 514 TIGRFAM PPR: pentatricopeptide repeat domain 336 370 IPR002885 -
Aed10g0905 514 TIGRFAM PPR: pentatricopeptide repeat domain 372 399 IPR002885 -
Aed10g0905 514 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Aed10g0905 514 TIGRFAM PPR: pentatricopeptide repeat domain 70 103 IPR002885 -
Aed10g0905 514 Gene3D Tetratricopeptide repeat domain 245 400 IPR011990 GO:0005515
Aed10g0905 514 Gene3D Tetratricopeptide repeat domain 124 244 IPR011990 GO:0005515
Aed10g0905 514 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 244 - -
Aed10g0905 514 PANTHER OS01G0545900 PROTEIN 5 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0905 Aed-Chr10 7607851 7610681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0905 28 512 Glycoside Hydrolase AT3G49170 30.000 1.71e-65 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0905 - - gmx:100820049 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0905 10 7607851 7610681 Aed10g0905 10 7607851 7610681 ECH