Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0890 ATGTTGAAACTTTACGTGTGTGTATTGGAAGCCAAGGACCTTCCCGTGAAGGATACCTATGTGAAGCTTAGACTCGGCAAGTTCAAGTCCAAGACAAGGGTATTGAAGAACACGTGCACCCCCGTTTGGAACGAGGAGTTTGGTTTCAAGGTGAATGGTGCAGAGCACGTGCTTGTTGTCTCTGTTGTTAACCATGATGATAACAATAACGAGTGCAGATCAGTGACCAATGGTTCTGTGGAGTTTGTCGCTCAGGTGCGGATTCAGGATAAGCAAACCTTGCTGCCCACTTGGTTCTCTCTTCAAACCCCCAACACTGGGAAGTTTTTCAATAAATATTGTGGGAAAATTCTCCTTACCGTTTCTCTTCATGGTAAAGGCCGTTCTTCTTTTATGAATCATAAGCATTCTCCAAATTCAACTATTGCAGTCGAGGACTCAAGAGACTTGGAAGGTCTTCTGCACATTTCATGTCACCCACTTTGTGATAAAATGAGTGTAGGCAAACAACTGTTGAAGGATATTTCTAATGGTCTGCATAGGATCTTCAAAAAGAAAGAGGGAAACTCAAAATCTGGGGATTCTTCAGAACTATCCACTTCATTATCTGATCATGATCAAGATAGTATACAGGAAAATTCATCTTCATCTCCTTGTAGCTTTGAAGAAGCCATTGCACTAATGGAATCAAGAGATGACAAGCCAGAAATGCCTGAAAATTTGTCGGGCGGTGTTCTAGTAGATCAAAACTATTTAGTCTCTCCTAATGACCTTAATGTGTTTCTTTTTGCACCAAATTCACAGTTTAGTAAAGATATGGCTGAACTGCAGGGAACAACAAATGTGCAAGAGGGGCCTTGGACATGGAAAAATGGAGACATGTCATGTTTAACACGAGTTGTTACCTATACAAAAGCAGCTACAAAGCTGATTAAGGCAGTTAATGCCATTGAGGAGCAAAGCTACATTAGAGTTAGCAGAAAGGAATTTGCTATACTTGTCAGTGTAAGCACACCTGAGGTCCCATATGGGAATTCATTTAGGATTGAATTGCTTTACAAGATAACGCAGGTGGAGGTGTCTTCTGGAGAGGAATCCTCCAATCTTGTCGTGTCTTGGGGCATTGTCTTCCTTCAAACTACAATGATGAAAGGCATGATAGAAGGCGGGGCAAGACAGGGATTGAAGGAGAGTTTTAGCCAGTTCTCAGACCAACTCACGCGGAGTTTTAAGGTTCTAGATAAGGCAGACTTACCAGACAAGGAACATTTGTTGGCAACTTTGCAAACAGAAGACCACTGGAATTGGTGGCAGACGATCACATACTTTTGGAATTTCACTGTGGTTTCCACCATATTCATGTTTTTGTATGTGTTGGTGCATATTTTAAGGTGTGGTCCAAGTCTACCTCAGGGCTTGGAGTTTAGAGGGCTTGAGTTGCCAGATAGTTTTGGAGAGTTCATTACAAGTGGAATTTTAATCCTCCAGTTGCAGCACCATGGCCTCAAAGCTCAAGGTGATGGATGGGTTCTAAGTGTGGCTTTAATTGAGGGGGTTGACTTGGCCTCCTTGGAGTCAGAAGGGTTGTCAGATCCCTATGTAGTTTTCACCTGTAATGCACAAACAAGGTCAAGCTCTGTCAAGCTTCAAATGTCGAATCCTCAATGGAATGAGATATTAGAGTTTGATGCTATGGAAGAACCACCATCAGTTTTACATGTGGAAGTTTATGATTTTGATGGTCCATTTGACCAGGATTTGAATCTTAGATCACCTCAAACGAATTCTACATTCCAGAAACTGTTTGCTTTGCCTCCGGAAGAATTTCTCATCAATGATTTCACTTGTTACCTCAAGAGAAAAATGCCTTTACAGGGTCGGCTATTTCTTTCAACAAGGATTCTGGGGTTTCATGCCAATTTGTTTGGACATAAAACCAAGTTTTTCTTCCTTTGGGAAGATATTGAGGAGATACAAGTGCTTCCTCCATCATTGACAACATTAGGAAGCCCTACGTTGGTCATAATTCTGCGAAGAGGTCGAGGTCTCGATGCAAGGCATGGTGCAAAGACTCAAGATGAAGAAGGGAGACTTAGGTTTCATTTTCAATCATTTGTTTCATTTAGTGCTGCCTCCAGAACAATAAAGGCCTTGTGGAGAACAAGAATACTGAACCCCTATCAGAAAGAACAAATTGCAGAAGAGCATGAAGATCAAGAAAGCCTTGTAATTCCAGAAGACTCTGCATGTATCTTAGAGGATGAAGAAAAAATGTCCAAAATTTTCTCGGCAGAACTTCCAATTAAGATGAAATCAGTGATGGGAATTTTTTATGGAGGAAACCTGGAGCATAAAATTATGCAGAGAACAGGATGTATGAACTATGAAACAACATCATGGGAACAAGTGAAGCCTGATGTCTTTGAAAGGCGTGTTTCTTACCAATTCAATCGACAAGTGTCGGCTTTTGGCGGTGAAGTCACATGCACACAACAAAAGTTTCAAAATGCAAACACTGGAGGTTGGAGTGTGATTGAAGTTATGGCTCTCCATGGTGTCCCTTTTGCTGATCACTTCCATATTCATTTTAGGTATGAAATTGAGAAATCCTCACTTGGTGAATGTGCTTGCAAGTGTGATGCTTACATTGGCATTATGTGGCTCAAGAGCTCTAAGTTTCAGCAGAGGATCAACAGGAACATAACAACCAAGTTTAATCTTCGATTGAAGGAAATATTTGAACTGGTTCAGAAAGAGATTTTGTTAATGTCTCAGAACTCACATGGTTAA 2790 0.4104 MLKLYVCVLEAKDLPVKDTYVKLRLGKFKSKTRVLKNTCTPVWNEEFGFKVNGAEHVLVVSVVNHDDNNNECRSVTNGSVEFVAQVRIQDKQTLLPTWFSLQTPNTGKFFNKYCGKILLTVSLHGKGRSSFMNHKHSPNSTIAVEDSRDLEGLLHISCHPLCDKMSVGKQLLKDISNGLHRIFKKKEGNSKSGDSSELSTSLSDHDQDSIQENSSSSPCSFEEAIALMESRDDKPEMPENLSGGVLVDQNYLVSPNDLNVFLFAPNSQFSKDMAELQGTTNVQEGPWTWKNGDMSCLTRVVTYTKAATKLIKAVNAIEEQSYIRVSRKEFAILVSVSTPEVPYGNSFRIELLYKITQVEVSSGEESSNLVVSWGIVFLQTTMMKGMIEGGARQGLKESFSQFSDQLTRSFKVLDKADLPDKEHLLATLQTEDHWNWWQTITYFWNFTVVSTIFMFLYVLVHILRCGPSLPQGLEFRGLELPDSFGEFITSGILILQLQHHGLKAQGDGWVLSVALIEGVDLASLESEGLSDPYVVFTCNAQTRSSSVKLQMSNPQWNEILEFDAMEEPPSVLHVEVYDFDGPFDQDLNLRSPQTNSTFQKLFALPPEEFLINDFTCYLKRKMPLQGRLFLSTRILGFHANLFGHKTKFFFLWEDIEEIQVLPPSLTTLGSPTLVIILRRGRGLDARHGAKTQDEEGRLRFHFQSFVSFSAASRTIKALWRTRILNPYQKEQIAEEHEDQESLVIPEDSACILEDEEKMSKIFSAELPIKMKSVMGIFYGGNLEHKIMQRTGCMNYETTSWEQVKPDVFERRVSYQFNRQVSAFGGEVTCTQQKFQNANTGGWSVIEVMALHGVPFADHFHIHFRYEIEKSSLGECACKCDAYIGIMWLKSSKFQQRINRNITTKFNLRLKEIFELVQKEILLMSQNSHG 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0890 929 ProSiteProfiles VASt domain profile. 757 920 IPR031968 -
Aed10g0890 929 Pfam GRAM domain 598 678 IPR004182 -
Aed10g0890 929 SMART gram2001c 596 662 IPR004182 -
Aed10g0890 929 ProSiteProfiles C2 domain profile. 489 611 IPR000008 -
Aed10g0890 929 Gene3D - 594 721 IPR011993 -
Aed10g0890 929 Pfam VAD1 Analog of StAR-related lipid transfer domain 246 394 IPR031968 -
Aed10g0890 929 Pfam VAD1 Analog of StAR-related lipid transfer domain 761 901 IPR031968 -
Aed10g0890 929 Pfam C2 domain 3 89 IPR000008 -
Aed10g0890 929 Pfam C2 domain 510 584 IPR000008 -
Aed10g0890 929 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 586 926 - -
Aed10g0890 929 Gene3D C2 domain 1 125 IPR035892 -
Aed10g0890 929 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 2 588 - -
Aed10g0890 929 MobiDBLite consensus disorder prediction 193 218 - -
Aed10g0890 929 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 127 IPR035892 -
Aed10g0890 929 Gene3D C2 domain 492 591 IPR035892 -
Aed10g0890 929 SMART C2_3c 3 103 IPR000008 -
Aed10g0890 929 SMART C2_3c 510 618 IPR000008 -
Aed10g0890 929 CDD C2 511 587 - -
Aed10g0890 929 ProSiteProfiles VASt domain profile. 242 414 IPR031968 -
Aed10g0890 929 PANTHER BNAA05G37250D PROTEIN 586 926 IPR044511 -
Aed10g0890 929 ProSiteProfiles C2 domain profile. 1 99 IPR000008 -
Aed10g0890 929 CDD C2 4 101 - -
Aed10g0890 929 PANTHER BNAA05G37250D PROTEIN 2 588 IPR044511 -
Aed10g0890 929 MobiDBLite consensus disorder prediction 186 218 - -
Aed10g0890 929 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 509 589 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0890 Aed-Chr10 7445815 7450336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0890 4 157 Lipid Metabolism Gene Families AT4G20080 26.582 2.60e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0890 - - gmx:100811103 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0890 10 7445815 7450336 Aed10g0890 10 7445815 7450336 ECH