Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0869 ATGGGTGGATCATTCTCAAAACGGAGGGGTTCTCGGCAACATTCGTCTTCAAATTTTTTTCCTCGGTACCAACAACCTCAATTCCCACTAAGCCAAGATAATGGACCTGTGGGGCATTATGGGCATTCGGCACAGGGCTATAGTGGTGGTGGTGGTCGTGCTCCAGAACAAGGAAAGAGCCCAGATAGGAAGTTTTCAAGGATAGGTGATGATTATAAGAGCTTGGACCAGGTAACTGATGCTCTGGCAAATGCTGGCCTGGAGTCTTCAAATCTTATTGTTGGGTTTGATTTTACGAAGAGCAATGAGTGGACAGGCGGAAGGTCATTTCAAAGAAGATGCCTGCATCACATTGGTCATGAACAAAATCCATATGAACAAGCTATATCTATCATTGGGAAAACGTTGTCTTCCTTTGACGAGGATAACTTAATTCCATGTTTTGGTTTTGGAGATGCATCAACACATGACCAGGAAGTTTTTAGTTTCTATCCTGATGAGAGATTTTGTCATGGATTTGAAGAAGTGTTGGAACGGTACAGGGAATTGGTCCCTCAATTAAAGCTTGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTTGAGCAAAGTGGAGGCCAATACCATGTGTTAGTGATTATAGCTGATGGGCAGGTGACGAGAAGTGTTGATATTGAGCATGGGCAGTTGAGTGCACAAGAAAAGAAAACTGTAGAAGCTATTGTAAAAGCTAGTGAATATCCCTTGTCAATCATACTAGTTGGGGTTGGAGATGGACCGTGGGATACGATGAAAAAGTTTGATGATAACATCCCTGCCCGAGCATTTGATAATTTCCAGTTTGTGAATTTCACAGAAATAATGTCGAAGAACATGGACCAGTCCAAAAAGGAAGCAGCGTTTGCACTTGCTGCCTTGATGGAAATACCCTCCCAGTACAAGGCAACACTAGCGCTTAATATATTGGGTGCTCATAGAGGGAAAGATATAGACCGAATTCCTCTACCACCACCTCTTTATGGTGCAGCGACATCTTTCAATTCCCCCAAAACTTCCCGTCAAAACAGTTTTTGTCCCAGTGCACCACCATCTAGCAGGCAGGATGTTACCCCGAACCCTCCTGCAATGTCTGCTTCTGATAATCAGGTTTGTCCCATTTGCCTCACCAATCCTAAGGATATGGCCTTCGGTTGTGGGCATCAGACATGCTGTGAGTGTGGACAATATCTTGAGTTATGCCCCATTTGCAGGAGTACCATTGAAACTAGAATAAAACTTTATTAG 1299 0.4373 MGGSFSKRRGSRQHSSSNFFPRYQQPQFPLSQDNGPVGHYGHSAQGYSGGGGRAPEQGKSPDRKFSRIGDDYKSLDQVTDALANAGLESSNLIVGFDFTKSNEWTGGRSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCHGFEEVLERYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLVIIADGQVTRSVDIEHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDTMKKFDDNIPARAFDNFQFVNFTEIMSKNMDQSKKEAAFALAALMEIPSQYKATLALNILGAHRGKDIDRIPLPPPLYGAATSFNSPKTSRQNSFCPSAPPSSRQDVTPNPPAMSASDNQVCPICLTNPKDMAFGCGHQTCCECGQYLELCPICRSTIETRIKLY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0869 432 MobiDBLite consensus disorder prediction 1 67 - -
Aed10g0869 432 MobiDBLite consensus disorder prediction 8 32 - -
Aed10g0869 432 SUPERFAMILY RING/U-box 385 428 - -
Aed10g0869 432 CDD vWA_copine_like 68 318 IPR010734 -
Aed10g0869 432 PANTHER RING-FINGER PROTEIN 1 432 - -
Aed10g0869 432 CDD RING-HC_RGLG_plant 388 432 IPR045317 GO:0061630|GO:0070534
Aed10g0869 432 Pfam Zinc finger, C3HC4 type (RING finger) 386 427 - -
Aed10g0869 432 Pfam Copine 114 327 IPR010734 -
Aed10g0869 432 ProSiteProfiles Zinc finger RING-type profile. 389 422 IPR001841 -
Aed10g0869 432 MobiDBLite consensus disorder prediction 349 381 - -
Aed10g0869 432 Gene3D von Willebrand factor, type A domain 89 307 IPR036465 -
Aed10g0869 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 432 IPR013083 -
Aed10g0869 432 SMART VWA_4 89 292 IPR002035 -
Aed10g0869 432 PANTHER COPINE FAMILY PROTEIN 1 1 432 - -
Aed10g0869 432 SUPERFAMILY vWA-like 91 273 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0869 Aed-Chr10 7291346 7295481 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0869 K16280 - gmx:100790800 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0869 10 7291346 7295481 Aed10g0869 10 7291346 7295481 ECH