LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed10g0840	ATGCTGAAATCAACCTTCAGTCCCATTTTTTGGGTACTTACTCCCAAACCCAAACCTTCAAAGCTCCGTTCCCGCGCAATCAAAAACACTTTCTTCACAAGCAGCACACCACATGTTCGACACAACGCCTCTATCAACCCGCCCCCTTCTTCAGCCTACATCCACCTCCCATTCTGCCGCAAACGCTGCCACTACTGCGACTTCCCCATCATCGCCCTCGGCTCCTCCGCCTCCGCCCAATCCCACGACGACGACCCGCGAGTCTCCAACTACATCCACTGGCTCTGCCGAGAAATCAACGCCACCAATGATTCCAACGCCACCGCGCCCCTCCAGACGGTCTTCTTCGGAGGCGGCACGCCCTCCCTGGTCCCTCCCAAGATGGTCTCCACGGTGCTGGACACTCTGAAGACCAAATTCGGGCTGCGCGAGGACGCCGAGATATCGATGGAGATGGACCCCGGCACGTTCGATGCCGGGAAGATGCAAGAGATGGTGGCGCTGGGAGTGAACAGAGTGTCCCTGGGAGTTCAGGCGTTCCAGGAGGAGCTTCTGAGAGCTTGTGGGAGGGCACATGGGGTGAGAGAGGTTCATGAGGCTATTGGTGTTGTCAAGTTTTGTGGTGTTCAGAATTGGAGCATTGATCTCATTGCTTCGTTGCCCCATCAGAGTGGTGAGATGTGGGAAGAGAGTCTTAGGCTCGCCATTGAGGCTCGCCCGACTCATCCAATTACAATTGTGGAGATCCCAGAAATCTTGATGCAATCATGGTACTCACCAGGGGAATTCCCAATGCCTTCTGAAACACAATCAGCTGAGTTCTATAAGGTGGCTTCAAGAATGCTTTCTGATGCGAGCTACCACCATTATGAAATCAGCAGCTACTGCAAGAGTGGATACGAGTGCAAACACAACTCTATCTATTGGAAGAACAATCCTTTCTATGGCTTTGGCCTTGGCTCTGCAAGCTTTGTTGGTGGGTTGAGGTTCTCAAGACCAAGGAAGATGAATGATTACATTAATTTTGTGCAGAATCTGGAGAATGGATTAGTAAATAGCTCTGTTGAAGGTCACATTCATAGCAAGGACACAGCCATGGATGTGGTGATGCTATCCCTAAGAACTGCACAAGGCATAGACTTGAAGAGTTTTCAAGAATCCTTTGGCAGCTTTATTGTTTTGTCTTTGCTTGAGGCTTATAAACCTTATGTTGAGAGTGGACTTGTGGTTTGTTTGGATGAGCATAGGAGAACCATTAGAATAGATGAGCTTAATTCTTTTTTGAACAAAACTAATGCAGAAGAAAGAGTGGCTTATATAAGGCTGAGTGATCCAGAAGGTTTCCTCTTATCAAATGAGTTGATAGCCCTAGCTTTTGGGGTTATTGACTCTTGGAAGGATATTTCTCCATACAAAGAAGCAGAAGCTACTTGA	1434	0.4868	MLKSTFSPIFWVLTPKPKPSKLRSRAIKNTFFTSSTPHVRHNASINPPPSSAYIHLPFCRKRCHYCDFPIIALGSSASAQSHDDDPRVSNYIHWLCREINATNDSNATAPLQTVFFGGGTPSLVPPKMVSTVLDTLKTKFGLREDAEISMEMDPGTFDAGKMQEMVALGVNRVSLGVQAFQEELLRACGRAHGVREVHEAIGVVKFCGVQNWSIDLIASLPHQSGEMWEESLRLAIEARPTHPITIVEIPEILMQSWYSPGEFPMPSETQSAEFYKVASRMLSDASYHHYEISSYCKSGYECKHNSIYWKNNPFYGFGLGSASFVGGLRFSRPRKMNDYINFVQNLENGLVNSSVEGHIHSKDTAMDVVMLSLRTAQGIDLKSFQESFGSFIVLSLLEAYKPYVESGLVVCLDEHRRTIRIDELNSFLNKTNAEERVAYIRLSDPEGFLLSNELIALAFGVIDSWKDISPYKEAEAT	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed10g0840	477	PANTHER	COPROPORPHYRINIGEN III OXIDASE	26	461	IPR034505	-
	Aed10g0840	477	SFLD	HemN-like, clustered with heat shock genes	49	414	IPR004559	GO:0004109\|GO:0005737\|GO:0006779\|GO:0051539
	Aed10g0840	477	SFLD	anaerobic coproporphyrinogen-III oxidase like	49	414	-	-
	Aed10g0840	477	SUPERFAMILY	Radical SAM enzymes	36	417	-	-
	Aed10g0840	477	Pfam	Radical SAM superfamily	54	234	IPR007197	GO:0003824\|GO:0051536
	Aed10g0840	477	SMART	MiaB	49	277	IPR006638	GO:0003824\|GO:0051536
	Aed10g0840	477	Gene3D	tm_1862 like domain	57	251	IPR023404	-
	Aed10g0840	477	TIGRFAM	hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase	51	406	IPR004559	GO:0004109\|GO:0005737\|GO:0006779\|GO:0051539
	Aed10g0840	477	ProSiteProfiles	Radical SAM core domain profile.	44	285	IPR007197	GO:0003824\|GO:0051536
	Aed10g0840	477	PANTHER	RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL	26	461	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed10g0840	Aed-Chr10	6998049	7000061	Proximal

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed10g0840	-		K07739	gmx:100779022	805.053

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed10g0840	10	6998049	7000061	Aed10g0840	10	6998049	7000061	ECH