Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0816 ATGGGGAGCCACGTAGGTTTTGAGGATGTTCTAAGATATTTCGATGAAGATGGTGATGGAAAGGTTTCACCTTCAGAGCTGAAGCACGGGCTGGGAATAATAGGTGGAGAGCTTATGATGAAGGAAGCAGAGATGGCAATAGCTGCATTGGACTCTGATGGAGATGGGTTGCTGGGTTTGGAGGATTTCATTGCTCTTATGGAAGCTGGGGGAGAGGAGCAGAAGCTGAATGATTTGAAGGTAGCTTTTGAGATGTATGACTCTGAAGGGTGTGGCTTTATAACCCCAAAGAGCTTGAAGAGAATGCTCAAGAAGATGGGTGAGTCCAAGTCCATTGAGGACTGCAAAGCCATGATCAAACAGTTTGATTTGAATGGAGATGGTGTTCTCAACTTTGAAGAATTCAGAATTATGATGCAGTGA 423 0.4444 MGSHVGFEDVLRYFDEDGDGKVSPSELKHGLGIIGGELMMKEAEMAIAALDSDGDGLLGLEDFIALMEAGGEEQKLNDLKVAFEMYDSEGCGFITPKSLKRMLKKMGESKSIEDCKAMIKQFDLNGDGVLNFEEFRIMMQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0816 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Aed10g0816 140 ProSiteProfiles EF-hand calcium-binding domain profile. 7 37 IPR002048 GO:0005509
Aed10g0816 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 7 140 - -
Aed10g0816 140 Gene3D - 70 140 - -
Aed10g0816 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 140 - -
Aed10g0816 140 SMART efh_1 114 140 IPR002048 GO:0005509
Aed10g0816 140 SMART efh_1 42 70 IPR002048 GO:0005509
Aed10g0816 140 SMART efh_1 6 34 IPR002048 GO:0005509
Aed10g0816 140 SMART efh_1 78 106 IPR002048 GO:0005509
Aed10g0816 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Aed10g0816 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
Aed10g0816 140 SUPERFAMILY EF-hand 7 139 IPR011992 -
Aed10g0816 140 Gene3D - 5 69 - -
Aed10g0816 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Aed10g0816 140 CDD EFh 78 140 IPR002048 GO:0005509
Aed10g0816 140 CDD EFh 7 67 IPR002048 GO:0005509
Aed10g0816 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Aed10g0816 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Aed10g0816 140 Pfam EF-hand domain pair 77 140 IPR002048 GO:0005509
Aed10g0816 140 Pfam EF-hand domain pair 11 67 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0816 Aed-Chr10 6773796 6774218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0816 7 140 EF-hand Containing Proteins AT1G76650 47.761 1.13e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0816 K13448 - gmx:100778709 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0816 10 6773796 6774218 Aed6g1349 6 18177667 18178089 ECH
Aed10g0816 10 6773796 6774218 Aed10g0816 10 6773796 6774218 ECH