Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0783 ATGAAGAGAAAGAGAGAAGGCAAAGACAGCATGGATATCGTGTGGCAGACTCCAGCGAATCCCCCGTACCCTCACGATTACGTTTTTCAAAACGGAATTCGATACGTTAGACCTTACTACTTCGAATTCATCGCTCATGTTAAAAATCGATGGGCTGGGAAAACCATTGTGGATTTATTCGCTGAGGAGTTTAAAGGTCGACCTTATGAGTATTATGTTAGTGCAGTGAAATGTGGAAGGATTCAAGTGGATGGTGAGATGGTACCCGTTTCATACATTGTTAAGTCATCTCAAAAGATAAGCCACTTCTTACACAGGCATGAACCACCTGTGATGGCTTGTGAGGTTCCTATTCTTCACAAAGATCCAGATGTGCTAACTGTTTGTAAGCCGGCATCTGTCCCTGTGCACCCATGCGGTCAATATCGTAAGAACACTGTTGTTGGCATTCTTCAAGCTGACCATGGGCTGGCTCCTCTATTCCCTATTCATCGACTGGATCGCCTTGTCTCAGGACTTCTTATTTTGGCCAGAAATTCTGCAAAAGCTGACATTTTTAGGCAACAGATAGAAGCCGGCTTAGTCCACAAACAATATATAGCAAAAGTAGTTGGAGAATTTCCTGAGGATGAGCTAATTGTTGATGCCAATATAGACTATAATGCACGAGAAGGAAGGAGCTCAGCAGAGGTCAGAGATTCTGCAAAGGGGAAGACTTCCACTACAAAATTTACTCGGATTAGTACTAATGGAACTCAAAGTATTGTTTTATGTGAACCAATCACTGGTCGTACTCATCAGGCAAGGAAAATGTTGGATGCTTTCTTTTTTTATATTTTTTTGTCTGATGAAGACGATATACGTGTTCATTTACAATATTCAGGGCACCCAATAGCCAATGATATGTTGTACATCTCAGAACAAACTGTTGATCGATCTGTTAAAGGGTTGAGTGCTGATAGATCAGCTCGCATATCTGATGCTTCTCTGACAGAAAATTTTGATGAGAAAGTGCTTAATGAATGTGAAGAAAATTCTAATGGAGATTTTAGCATTGATCCCATGTGTACAAATTGTCCAAATTTGGCACCCAAAGGATATGATGCTGATGAAGAAGGTCTATGGCTACATTGTTTTTGTTACTCTGGACCTGGATGGACGTATGACTGTCCATATCCTGATTGGGCGAAACTTAGCTAG 1200 0.4108 MKRKREGKDSMDIVWQTPANPPYPHDYVFQNGIRYVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYYVSAVKCGRIQVDGEMVPVSYIVKSSQKISHFLHRHEPPVMACEVPILHKDPDVLTVCKPASVPVHPCGQYRKNTVVGILQADHGLAPLFPIHRLDRLVSGLLILARNSAKADIFRQQIEAGLVHKQYIAKVVGEFPEDELIVDANIDYNAREGRSSAEVRDSAKGKTSTTKFTRISTNGTQSIVLCEPITGRTHQARKMLDAFFFYIFLSDEDDIRVHLQYSGHPIANDMLYISEQTVDRSVKGLSADRSARISDASLTENFDEKVLNECEENSNGDFSIDPMCTNCPNLAPKGYDADEEGLWLHCFCYSGPGWTYDCPYPDWAKLS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0783 399 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 12 272 - -
Aed10g0783 399 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 286 398 - -
Aed10g0783 399 PANTHER PSEUDOURIDINE SYNTHASE 12 272 - -
Aed10g0783 399 Pfam RNA pseudouridylate synthase 125 273 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aed10g0783 399 CDD PseudoU_synth_ScRIB2 101 397 - -
Aed10g0783 399 ProSitePatterns Rlu family of pseudouridine synthase signature. 163 177 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aed10g0783 399 Gene3D Pseudouridine synthase 110 333 - -
Aed10g0783 399 PANTHER PSEUDOURIDINE SYNTHASE 286 398 - -
Aed10g0783 399 SUPERFAMILY Pseudouridine synthase 108 279 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0783 K15454 - gmx:100811500 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0783 10 6493167 6499268 Aed10g0783 10 6493167 6499268 ECH