Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0710 ATGTGGCGTCGAAGCTTCCCGAAGCTCCACCTCAGTCTCAGAGCTCCGGGTTTAGGGTTTTCGACGCGCGAGGTGGGGAGGAAGTTCGCGGCGTTGTGGGGGAACGGCGATTACGGGAGATTGGGTCTTGGCAACTTGGATTCGCAATGGAAACCCGTCGTTTGCCCCACCTTCCGCAACCAAACCCTAAATGCCATTGCTTGCGGCGGTGCTCACACCCTCTTCTTAACAGATGATGGATGTGTTTATGCAACTGGTCTTAATGATTTTGGACAACTTGGTGCATCAGAGAGTAAACACTACTCGGTGGAGCCACTTTGTGTTTTTGGACAGGAGAAGAAAGTTGTGCAGATCTCTGCTGGTTATAATCATTCTTGTGCGATTACAGTGGATGGAGAGCTATACATGTGGGGAAAGAATACAAGTGGGCAGCTTGGACTTGGAAAAAGGGCTCCAAACATAGTGCCTTTGCCAACTAAAGTGGAATACTTGAATGGAATCAACATTAAAATGGCGGCTTTGGGTTCAGAGCACTCAGTGGCTGTTAGTGATGGTGGAGAGGCCTTTAGTTGGGGAATTGGAGTGTCTGGTATACTTGGTCATGGTCATGAGTCAAGCATCTTAGGATTCTTCAAAAGTTACAGTGAGTATACCCCAAGGCTTATAAAGAATCTTGAAGGAATCAAGGTAAAATACGTTGCTGCTGGGTTGCTAAATTCAGCTTGTACTGATGAAAATGGTTCTGTTTTTGTATTTGGTGAAAGAGGAATTGAAAAATTGCAATTAAAGGCGATGAGCAATGCAACAAAACCATCCTTGGTCAGTGAACTTCCATCCTCAAAAGAAGTTGCTTGTGGTGGCTACCATACCTGTGTCCTGACAAATTCTGGTGAGCTTTACACTTGGGGTTCAAATGAAAATGGCTGCCTTGGTATTGGTTCCTCAGATGTCATTCATCTACCTCAAAAGGTTCAAGGGCCATTCTTGAAGTCTTCTGTTAGCCAGGTTTCTTGTGGTTGGAAGCATACTGCAGCTCTTTCTGAAGGAAGAGTGTTCACGTGGGGCTGGGGAGGTTCCAATGGGACGTTCTCTGAAGTTGGACATTCTTCTAGTGGACAATTGGGTCATGGAAGTGATGTGGACTATATAAATCCTACAAGAGTTTGTTTTGGAGAAGACGCAAAAGCATTGCAAGTTTCATGTGGGTTCAATCATACAGGTGCTATACTTGAATATGCATAA 1242 0.4517 MWRRSFPKLHLSLRAPGLGFSTREVGRKFAALWGNGDYGRLGLGNLDSQWKPVVCPTFRNQTLNAIACGGAHTLFLTDDGCVYATGLNDFGQLGASESKHYSVEPLCVFGQEKKVVQISAGYNHSCAITVDGELYMWGKNTSGQLGLGKRAPNIVPLPTKVEYLNGINIKMAALGSEHSVAVSDGGEAFSWGIGVSGILGHGHESSILGFFKSYSEYTPRLIKNLEGIKVKYVAAGLLNSACTDENGSVFVFGERGIEKLQLKAMSNATKPSLVSELPSSKEVACGGYHTCVLTNSGELYTWGSNENGCLGIGSSDVIHLPQKVQGPFLKSSVSQVSCGWKHTAALSEGRVFTWGWGGSNGTFSEVGHSSSGQLGHGSDVDYINPTRVCFGEDAKALQVSCGFNHTGAILEYA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0710 413 Gene3D - 158 412 IPR009091 -
Aed10g0710 413 Gene3D - 24 157 IPR009091 -
Aed10g0710 413 PANTHER OS11G0545800 PROTEIN 25 413 - -
Aed10g0710 413 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 186 246 IPR000408 -
Aed10g0710 413 Pfam Regulator of chromosome condensation (RCC1) repeat 296 346 IPR000408 -
Aed10g0710 413 Pfam Regulator of chromosome condensation (RCC1) repeat 79 128 IPR000408 -
Aed10g0710 413 Pfam Regulator of chromosome condensation (RCC1) repeat 186 237 IPR000408 -
Aed10g0710 413 Pfam Regulator of chromosome condensation (RCC1) repeat 33 76 IPR000408 -
Aed10g0710 413 Pfam Regulator of chromosome condensation (RCC1) repeat 367 409 IPR000408 -
Aed10g0710 413 Pfam Regulator of chromosome condensation (RCC1) repeat 131 182 IPR000408 -
Aed10g0710 413 SUPERFAMILY RCC1/BLIP-II 32 410 IPR009091 -
Aed10g0710 413 PRINTS Chromosome condensation regulator RCC1 signature 132 148 IPR000408 -
Aed10g0710 413 PRINTS Chromosome condensation regulator RCC1 signature 29 45 IPR000408 -
Aed10g0710 413 PRINTS Chromosome condensation regulator RCC1 signature 286 304 IPR000408 -
Aed10g0710 413 PRINTS Chromosome condensation regulator RCC1 signature 344 365 IPR000408 -
Aed10g0710 413 PRINTS Chromosome condensation regulator RCC1 signature 63 76 IPR000408 -
Aed10g0710 413 PRINTS Chromosome condensation regulator RCC1 signature 82 98 IPR000408 -
Aed10g0710 413 PRINTS Chromosome condensation regulator RCC1 signature 172 188 IPR000408 -
Aed10g0710 413 PRINTS Chromosome condensation regulator RCC1 signature 188 202 IPR000408 -
Aed10g0710 413 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 28 79 IPR000408 -
Aed10g0710 413 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 132 185 IPR000408 -
Aed10g0710 413 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 25 413 - -
Aed10g0710 413 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 412 IPR000408 -
Aed10g0710 413 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 247 296 IPR000408 -
Aed10g0710 413 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 336 346 IPR000408 -
Aed10g0710 413 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 80 131 IPR000408 -
Aed10g0710 413 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 297 349 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0710 Aed-Chr10 5781472 5787721 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0710 - - gmx:100811823 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0710 10 5781472 5787721 Aed10g0710 10 5781472 5787721 ECH