Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0665 ATGGAATCCGACAAAACAACCTTTGCCGCCGTGGTCCTAGGAACATGTACCCGACCCTCCTGGCCCATCCTCTTCACCCTCTTCACTCTCGTCACCTTTGTCTCCCTCCACCTTCCACCCAGGCCCGTTTGGTTCATCTCGGGTCCATACCCCGATCCAACACCAACATGCGCCGCCTTCTTCCGCGATGTTCCGCCCAGGAAGCTCGTCATGTCGATCCAGGATTTTGGCGGCGTGGGCGACGGGAAAACGTCCAACACCGAATCGTTTCGGAGGGCAATTCGGTACATGCAGACCTTCCAGAATCGCGGTGGGGCCCAGCTTAATATCCCCACAGGAACTTGGCTCACCGGTAGTTTCAATCTCACCAGTAATTTCACGCTTTTTCTTCACCAAGGTGCTGTTATTCTCGCCTCTCAGGACCCAAAAGAATGGCCAATAATTGAGGCATTGCCATCTTATGGAAGAGGGAGAGAGAGGCTAGGGGGAAGACATATTAGCCTTATACATGGAAATGGCATTAGCAATGTTGTCATTACAGGACAAAATGGGACAGTTGATGGTCAAGGAAAGATGTGGTGGGAACTTTGGTGGAACAGAAGATTGGAGCACACTAGAGGGCACCTCCTTGAATTAATCAACTCGGATAATGTTCTTATATCAAACCTCACCTTTCGAAATTCTCCTTTTTGGACCATCCATCCTGTTTACTGCAGCAATGTTGTGATCAAAGGAATGACAATCTTGGCTCCTCTTAATGCACCAAATACTGATGGCATAGACCCAGACTCAAGTACCAATGTATGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTCGTAGCCATTAAGAGTGGTTGGGATCACTATGGAATCACCATGGCCCAACCTAGCACAAATATTGTAGTGAGGAGAATATCAGGCACTACCCCAACTTGTTCTGGTGTAGGCATAGGTAGTGAAATGTCTGGTGGAATTTCAAATATCACAATAGAGAATTTGCACGTGTGGGATTCAGCAGCCGGTGTTCGCATAAAATCTGACAAAGGCAGAGGAGGGTACATAACAAATGTTAGAGTTAGTGACATAAGAATGGAGAGAGTGAAGATACCAATTAGGTTCAGTAGAGGTTCAAATGACCACCCTGATGATGGGTGGGATCCAAATGCTGTTCCTAGATTCAAAGACATTATAATCAGTAATGTGGTAAGTGTAAATTCAACAAAAGCCCCAGTTTTGGAAGGTGTAGAGGGTTCATCATTTGAAGGCTTGTGCTTCAAAAACATTACCATGCACGGTGTAGCCCTGAAAGCAACATGGCGTTGTGAATATGTGTCTGGTTTTGCCACCGAGGTTTTCCCTGTTCCTTGTCCTGAGCTACGGAACAATAGCTATTCATCATGGTGTTCCCCTTCCTGA 1422 0.4641 MESDKTTFAAVVLGTCTRPSWPILFTLFTLVTFVSLHLPPRPVWFISGPYPDPTPTCAAFFRDVPPRKLVMSIQDFGGVGDGKTSNTESFRRAIRYMQTFQNRGGAQLNIPTGTWLTGSFNLTSNFTLFLHQGAVILASQDPKEWPIIEALPSYGRGRERLGGRHISLIHGNGISNVVITGQNGTVDGQGKMWWELWWNRRLEHTRGHLLELINSDNVLISNLTFRNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDHYGITMAQPSTNIVVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYITNVRVSDIRMERVKIPIRFSRGSNDHPDDGWDPNAVPRFKDIIISNVVSVNSTKAPVLEGVEGSSFEGLCFKNITMHGVALKATWRCEYVSGFATEVFPVPCPELRNNSYSSWCSPS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0665 473 PANTHER PECTIN LYASE-RELATED 13 471 - -
Aed10g0665 473 SUPERFAMILY Pectin lyase-like 65 462 IPR011050 -
Aed10g0665 473 Gene3D - 61 450 IPR012334 -
Aed10g0665 473 SMART pbh1 265 297 IPR006626 -
Aed10g0665 473 SMART pbh1 215 237 IPR006626 -
Aed10g0665 473 SMART pbh1 327 348 IPR006626 -
Aed10g0665 473 SMART pbh1 299 321 IPR006626 -
Aed10g0665 473 SMART pbh1 238 264 IPR006626 -
Aed10g0665 473 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 13 471 - -
Aed10g0665 473 Pfam Glycosyl hydrolases family 28 167 447 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0665 Aed-Chr10 5381952 5385947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0665 1 461 Glycoside Hydrolase AT4G33440 67.742 0.0 639
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0665 - - gmx:100814190 923.694