Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0664 ATGTTTCTTATAGCCATGATCACCTGCACACACATTACTTCAGCAGAATGTGACAATGCGAATGACTATTGCCCCACAACACCACCCCAAAAGCAAACCACATTCCTCAACGGCTTCCCCTGCGACAACCCAAACAACACAATCGCACACGAATTCAAGAGCATGGAGCTAACCAAGCCCGGTCCCAGAGACAACAATTTTGGTTCATCCGTTAAATTTGTGACTGCTTCAGCTTTCTCTGGCCTCAACACTCTAGGCCTGGCTACCGGCAGGAGCGACATCGAAGTGGACGGTCTAGTGAGCCTCCACAACCACCCTAGAGCCACCGAGGTGATCTATGTGAGGCAAGGTGATGAGGTGGTGGCGGCGTTCCTGGACACTCGGAACCAGCTCTTCCGGAAGAGTCTGAAGGCTGGTGATGTGTTTGTGGTCCCCAGAGGCTTGTTTCACTTCTTGTTGAACCGTGGTGCACAAGTTGCGACCGTGTTGTCCGTGTTTAACAGCCAGAATCCTGGCTTGGGATCCTTCACTTCCTTACCTTCTGGAACGTTGGATTCGGTTGAGAAGCTCAAGAGGAAGGTTATTTCACTTTCTGACTTGGAACTTGATGGTGTTAATAGTGATTTGTCTTCTGCAGTGTTGGATATCATTTACAGTTAA 660 0.4924 MFLIAMITCTHITSAECDNANDYCPTTPPQKQTTFLNGFPCDNPNNTIAHEFKSMELTKPGPRDNNFGSSVKFVTASAFSGLNTLGLATGRSDIEVDGLVSLHNHPRATEVIYVRQGDEVVAAFLDTRNQLFRKSLKAGDVFVVPRGLFHFLLNRGAQVATVLSVFNSQNPGLGSFTSLPSGTLDSVEKLKRKVISLSDLELDGVNSDLSSAVLDIIYS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0664 219 PRINTS Germin signature 103 123 IPR001929 GO:0030145
Aed10g0664 219 PRINTS Germin signature 134 154 IPR001929 GO:0030145
Aed10g0664 219 PRINTS Germin signature 167 182 IPR001929 GO:0030145
Aed10g0664 219 Pfam Cupin 57 174 IPR006045 -
Aed10g0664 219 ProSitePatterns Germin family signature. 98 111 IPR019780 GO:0030145
Aed10g0664 219 Gene3D Jelly Rolls 15 203 IPR014710 -
Aed10g0664 219 SMART Cupin_1_3 55 196 IPR006045 -
Aed10g0664 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 5 203 - -
Aed10g0664 219 CDD cupin_OxOx 18 175 - -
Aed10g0664 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 5 203 - -
Aed10g0664 219 SUPERFAMILY RmlC-like cupins 34 182 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0664 Aed-Chr10 5381007 5381666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0664 21 173 Miscellaneous Gene Families AT1G72610 37.255 4.16e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0664 - - gmx:100809017 335.109