Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0619 ATGGATTTGCAGGAGAACGCGGGGAATTTAGACGCCGCCATCGAGAAATTGCTGAATGCGGAGAAGCATGCGAGGCTCGCCGGCGAAGTCTCCGACACCAGAAAAGCCGTCACCGAGATTTTACGGCTGTGCTTCGAAGCGCGTGCCTGGAAAACCCTTAATGATCAGATTGTTCTCTTGTCCAAGCGGCGTGGCCAGCTTAAGCAGGCTGTTACAGCGATGGTCCAGCAGGCTATGCAATATATTGACGAGACACCGGATCTTGAAACTCGTATAGAACTCATCAAAACCTTGAACAGTGTATCTGCAGGAAAGATATATGTTGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAAATTAAGGAAGGACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGCGCCATGGCTAAAACTGAGAAAATTGCATTCATTCTTGAACAAGTTCGTTTGTGTCTAGACCGCCAGGATTATGTTCGTGCACAAATACTCTCAAGAAAGATTAGTACAAGAGTGTTTGACGCTGATGTTTCAAAGGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCCTGCAGATATACCATCTCTACCGGAGTTGAAGCGGATCTACTATGAACTAATGATTCGGTATTATTCCCATAAAAATGATTATCTTGAAATTTGCCGTTGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATCCTGCTGAGTGGATTCCAATCCTGAGGAAAATATGTTGGTATTTGGTTCTATCACCACATGATCCAATGCAGTCAAGCCTTCTCAATTCTACCTTGGAAGATAAGAATCTGTTTGAGATTCCAAACTTCAAGTTACTGTTGAAACAGTTGGTCACTATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAAGAATGAGTTTGAGAATGAGAATAACTTAGGAAAGAATTTGGGTGAAAAAGCAGCTGAAGATCTAAGGGAAAGAGTAATTGAACATAATATTATTGTTATATCAAAATACTATGCAAGGATTACTTTGAAGAGACTTGCAGAGCTTTTGTGTCTCAGTGTTCAGGAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCAAAGGCATTGGTGGCGAAGATTGATAGACCCGTGGGAGTAGTTTGTTTCCAAAGAGCCAAGGATAGCAATGACATTCTTAACTCATGGGCAACAAACTTGGAGGGGCTGCTTGATCTTGTGGAGAAGAGCTGCCATCAAATACACAAGGAAACCATGGTGCATAAAGCTGCCTTGAAGGTTTAA 1335 0.418 MDLQENAGNLDAAIEKLLNAEKHARLAGEVSDTRKAVTEILRLCFEARAWKTLNDQIVLLSKRRGQLKQAVTAMVQQAMQYIDETPDLETRIELIKTLNSVSAGKIYVEIERARLIKKLAKIKEGQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSRKISTRVFDADVSKEKKKPKEGDNVVEEAPADIPSLPELKRIYYELMIRYYSHKNDYLEICRCYKAIYEIPSVKENPAEWIPILRKICWYLVLSPHDPMQSSLLNSTLEDKNLFEIPNFKLLLKQLVTMEVIQWTTLWDSYKNEFENENNLGKNLGEKAAEDLRERVIEHNIIVISKYYARITLKRLAELLCLSVQEAEKHLSDMVVSKALVAKIDRPVGVVCFQRAKDSNDILNSWATNLEGLLDLVEKSCHQIHKETMVHKAALKV 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0619 444 Gene3D - 332 409 IPR036388 -
Aed10g0619 444 SMART PINT_4 334 420 IPR000717 -
Aed10g0619 444 Pfam PCI domain 293 401 IPR000717 -
Aed10g0619 444 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12 HOMOLOG A-LIKE 5 443 - -
Aed10g0619 444 SUPERFAMILY "Winged helix" DNA-binding domain 333 410 IPR036390 -
Aed10g0619 444 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 334 420 - -
Aed10g0619 444 ProSiteProfiles PCI domain profile. 235 405 IPR000717 -
Aed10g0619 444 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 407 439 IPR040896 -
Aed10g0619 444 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 5 443 IPR040134 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0619 Aed-Chr10 4983052 4987941 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0619 K03035 - gmx:100793755 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0619 10 4983052 4987941 Aed10g0619 10 4983052 4987941 ECH