Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0604 ATGGCGACGGTGATGCAGAAAATCAAAGACATCGAAGATGAGGTACTTGTTCTGAGTGGAATACAAGGGAATGATTATGGCAAGGACCCAAAAAAACAAGGCTACTGCTCATCATTTGGGCTTGCTGAAGGTTTTGATTCATTATTGGTAACTGTCTGGTGCCAGGCTAAACTAGCAAAGCTGCGGAGGGAACTCCTTACACCTTCATCAAAAGGAGCTGGAGGTGCTGGTGAAGGTTTTGATGTTACTAAAAGTGGGGATTCAAGAGTTGGTCTTGTGGGCTTCCCTTCAGTTGGCAAATCTACTCTACTGAATAAGTTGACTGGGACATTTTCTGAGGTTGCTTCCTATGAGTTTACTACCTTAACTTGCATCCCAGGTGTGATCACATATCGTGGAGCTAAAATCCAGTTGTTGGATCTCCCTGGAATTATTGAGGGTGCTAAGGATGGAAAGGGTAGAGGAAGGCAGGTTATTAGTACTGCAAGGACATGCAATTGCATTTTGATTGTCCTTGATGCAATAAAGCCAATAACGCATAAGCGTCTTATTGAAAAAGAGCTAGAGGGATTTGGTATAAGGTTAAACAAAGAGCCACCAAATCTGACTTTTAGGAAGAAAGATAAAGGTGGAATCAATCTTACCTCAACTGTCACCACAACACATCTGGATCTTGAGACTGTGAAGGCTATATGTAGTGAGTACAGAATGCACAATGCAGATATTACCCTCAGGTATGATGCCACTGCCGATGACCTCATAGATGTCATTGAGGGGAGCAGAGTATATATCCCTTGTATCTATGTTGTGAACAAGATTGATCAGATCACACTTGAGGAACTGGAGATCTTGGATAAGCTACCCCATTACTGCCCAATCAGTGCACACCTGGAGTGGAACCTTGATGGTCTTCTGGAGAAAATTTGGGAATATCTCAGCTTAACCCGTATTTATACTAAACCTAAAGGGATGAATCCTGATTATGAAGACCCTGTAATATTATCGTCTAAGAGGAGGACAGTTGAGGACTTCTGCAATTGCATTCACAAGGACATGCTTAAACAGTTTAAGTATGCTTTGGTCTGGGGTTCAAGTGCAAAACACAAGCCTCAAAGAGTTGGCAAGGAGCATGAACTCGAAGATGAAGACGTGGTTCAAATTATCAAGAAAGTATAA 1176 0.4209 MATVMQKIKDIEDEVLVLSGIQGNDYGKDPKKQGYCSSFGLAEGFDSLLVTVWCQAKLAKLRRELLTPSSKGAGGAGEGFDVTKSGDSRVGLVGFPSVGKSTLLNKLTGTFSEVASYEFTTLTCIPGVITYRGAKIQLLDLPGIIEGAKDGKGRGRQVISTARTCNCILIVLDAIKPITHKRLIEKELEGFGIRLNKEPPNLTFRKKDKGGINLTSTVTTTHLDLETVKAICSEYRMHNADITLRYDATADDLIDVIEGSRVYIPCIYVVNKIDQITLEELEILDKLPHYCPISAHLEWNLDGLLEKIWEYLSLTRIYTKPKGMNPDYEDPVILSSKRRTVEDFCNCIHKDMLKQFKYALVWGSSAKHKPQRVGKEHELEDEDVVQIIKKV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0604 391 CDD TGS_DRG1 311 390 - -
Aed10g0604 391 ProSiteProfiles TGS domain profile. 313 389 IPR004095 -
Aed10g0604 391 ProSitePatterns GTP1/OBG family signature. 140 153 IPR006074 GO:0005525
Aed10g0604 391 PRINTS GTP1/OBG GTP-binding protein family signature 111 129 IPR006073 GO:0005525
Aed10g0604 391 PRINTS GTP1/OBG GTP-binding protein family signature 90 110 IPR006073 GO:0005525
Aed10g0604 391 PRINTS GTP1/OBG GTP-binding protein family signature 155 173 IPR006073 GO:0005525
Aed10g0604 391 PRINTS GTP1/OBG GTP-binding protein family signature 138 153 IPR006073 GO:0005525
Aed10g0604 391 Gene3D - 42 148 IPR027417 -
Aed10g0604 391 CDD DRG 88 320 IPR045001 GO:0003924|GO:0005525
Aed10g0604 391 SUPERFAMILY TGS-like 336 389 IPR012676 -
Aed10g0604 391 PANTHER DEVELOPMENTALLY-REGULATED GTP-BINDING PROTEIN 1 1 390 - -
Aed10g0604 391 Gene3D - 306 391 IPR012675 -
Aed10g0604 391 Pfam 50S ribosome-binding GTPase 89 181 IPR006073 GO:0005525
Aed10g0604 391 Gene3D - 152 262 - -
Aed10g0604 391 Pfam C-terminal region of MMR_HSR1 domain 209 314 IPR031662 -
Aed10g0604 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 347 IPR027417 -
Aed10g0604 391 Pfam TGS domain 316 389 IPR004095 -
Aed10g0604 391 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 88 313 IPR031167 GO:0005525
Aed10g0604 391 TIGRFAM small_GTP: small GTP-binding protein domain 87 239 IPR005225 GO:0005525
Aed10g0604 391 PANTHER - 1 390 IPR045001 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0604 Aed-Chr10 4835788 4842999 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0604 K06944 - gmx:100797441 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0604 10 4835788 4842999 Aed10g0604 10 4835788 4842999 ECH