Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0598 ATGGCTGAAGATAGCCCGCGAGTTGGTGGGTTTTCAGCAGGCCTGGCTGTGATATTGAACGGCGAGGATGGTAAGAAATTGCCAAAAACTCGACTTCTTTCTTGCTGTGATGATTTAGGTCAGCAGTCGGTGGAGCGAACCCTTGAATACATATTTGGCCTCTCAAACAGATCACTCAATTCCTTGACTGCTCCAGTTGATCGTGATTTTATTCGCTCTCTCATTAGGAATGACTTCTCAAGAAATAATGTGAAATTGAGTGATTCTCATGGTGAAAGAGATGGGATCTGTGTTAATAGTAAAAAGGGCAATGGACCTAATGTTATAGGCCTAGAAGAATCCAGCATCTGCGGTGATATTAAAGTCATCAAATCACCTTTTCTTATAGAGAGCATGGCGATGTTCAGTAGTGCCAGGGCTAGTGCTTGTGTTTGGAAAGGAAAATGGATGTATGAAGTTATGTTGGAGACATCTGGCATACAGCAGCTTGGTTGGGCTACTCTATCTTGCCCTTTCACTGACCATAAAGGTGTTGGCGATGCTGATGATTCATATGCTTATGATGGGAGACGAGTTAGCAAGTGGAACAAGGATGCTGAGACATATGGTCAGTCGTGGGTTGTTGGTGATATCATTGGATGTTGTATAGATTTAGATCGAGATGAAATATTATTCTACAGGAATGGTAATTCCCTTGGGGTGGCATTCCAAGGAATTCGAAAACTGGGTCCTGGTTTTGGTTATTATCCAGCAGTTTCTCTTTCCCAGGGTGAAAGATGTGAGTTGAACTTTGGAGCTCGACCCTTTAAGTATCCAATTGAAGGCTACCTTCCTCTTCAGGCTCCTCCCTCCAAGAGCTACTTTGTCACCCAATTGCTGCAATGCTGGTCAAGGCTGTTGGACATGCATTCAGTGGAACGAGCTGAGCATTCTTTATTTCAGAAATTGAGAAGAGTGAAGAGGTTTGTTTCTTTGGAAGAAATTTTCCATCCAGCTTCCTATGCCATATGCGAGGAATTATTCTCTATACTTGAAGCAGATGTTGGGATCACAGAGTATATGGTTTGGGGTCCACTGTTGTCTTTCATGTTTGAAGTTTTTGGTTTGCATGCACCCCATGATTACTTAAGCTTGGATAAAGTAGTTGAGGTTCTGCTAAAATTTCAAGGATCACATGTGCTATTTGAACACATCCTAAATGCCCTATCCTGTGGTTGTAAAATAGCCTCATTAGTTCTAATTGAGTGTCCTTACTCTGGATCATATTCTCACCTTGCATTGGCATGTCATCTACTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAGTCACTGGATTTTGAATTCTTGTTTGAAGGTTTTCTTTCTCAAAAGACCCCAAACAAACAGGATCTTGACTCCATGATACCAACTGTTTGGTGGCCTGGTTCATGTGAAGATGCATCTTATGAAGGTAACATGATGTTGACAACCACAGCTTTGTCTGAATCAATCAGCAAGATTGAGGAGAAGCATAGGGACCTCTGTCGCTTAGTGATACAATTTATACCACCTACGAATCCTCCCCAGTTACCTGGAGCAGTATTTAGGACATTTTTACAGAGCCTTCTACTGAAGAACAGAGGAGTAGAACGAAATATTCCACCCCCTGGAGTTTCTAGCAACTCAGTTCTTGTTTCAATTTACACAGTTGTACTCCATTTTCTATCTGAAGGATTTGCCTTGGGTGACATCTGTGGCTGGTTAAAGAGCTGCAAAGCAGATGTTGGTTTCCTTCATAGAGGAGGTGAACAAAGTTTTCCTGTACATTTATTTCTGAAAAATGATTCCCATAGAGCTGATATTTCCAGGCTTGGGGGATCCTATAGTCATTTATCAAAGCTACACCCAACAGTTGATCATGAAATAGAAGTGATTCAATGGGATGAAGGTTGCATGGATAGAGAAGAAACCAGGGTCACTCATTCAACCAGGCAGAAGCCATGCTGTTGTTCTAGTTATGATTCTGATTTTACAAGGAACTTCAAGGTTCCAGCTAAATACCTGGCCAAAGGTTCTCGTGGTCACTGTAGCTCTATTCCAGAAAGATCTGCCCATGTAGCTGCTGAATGTAGTGATGGGAGTTTGGATGATGAGATAACTGATAAACCAAGCTCCAGTGATCAATCTGAACCTGAGTATGGTTACCGCCAAGTGCACCATATGAAGTCTGTACCAAAGGATACTAATTTGTCTGCAGCTACACTACGAGAAGAAGAGCTACTTGATGCTTTGCTATGGTTGTATCATGTTGGTCTTGCTCCGAATTTTAAGCAGGCATCATACTACATGACTCATCAGGCACAGTCAATTTCCCTTTTGGAGGAAACTGATAAACAAATAAGAGAACGAGCTTGCAGTGAGCAATTAAAGCATTTGAAAGAAGCTCGTAACGAATATAGAGAAGAGGTTATTGATTGTGTTAGGCATTGTGCTTGGTACCGCATCTCTCTATTTTCTCGGTGGAAGCAAAGAGGAATGTATGCAATGTGTATGTGGGTTGTCCAGTTGCTACTGGTTCTTAGCAATATGGATTCGGTGTTTATCTACATCCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTGTTGCGGAAGAGTGATCCTCCCTTTGTTCCATCCACAATTTTCATCAAGAGAGGACTTGCTTCATTTGTCACCTTTGTGGTTACCCATTTCAACGATCCAAGAATATCAAGTGCAGATCTTAGGGATCTTCTTCTTCAGTCTATATCTGTCCTGGTGCAATACAGGGAGTATTTGGCTACCTTTGAGAGCAATGAGGCAGCCACCCAAAGAATGCCAAAAGCTTTATTATCAGCATTTGATAACAGATCTTGGATTCCAGTGACGAACATACTCCTACGATTATGCAAGGGTTCTGGTTTTAGTTTTTCAAAGAATGGAGAATCATCTTCATCGTCAGTTCTTTTTCAAAGGTTGCTAAGAGAAGCTTGCATAAATGATGAAGGGTTGTTTTCATCTTTTCTAAACCGTCTGTTCAATACGCTCAGCTGGACCATGACTGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAAAAGTACCAGGTAATAGAGTTTCAGCAAAGGAAATGCTGTGTCATATTTGATCTTTCATGTAATCTTACAAGAATTCTGGAGTTCTGCACTCGTGAGATTCCTCAAGCATTCCTGTCTGGACCAGACACAAACCTCCGAAGGTTAACTGAGTTGGTTGTATTTATCTTAAATCACATTACTTCTGCAGCTGATGCTGAATTCTTTGACCTGTCCCTTAGACGGCATAGCCAACCTCCAGAAAAAGTAAACCGAGGCATGATATTGGCACCTCTAGTAGGGATCATCTTAAATTTATTGGATGCTACAAATTCAGCAGAATATCGAGAAAACAATGATCTTTTAGATGTTTTTGCAAGCATGGACTGCCCAGATACTGTTCAATATGGATTCCAGTATCTTTTGGATTATAACTGGGATGGATCTTTTCGGGGGGAAGCTTATGTGGCAAAATATGAGCAGCTAGAGAATTTTCTAAGTCTCCTTACTTGCCGCACTATGTCACAACATGATAAAGTGGATAGTGTGGGAGATACAACAGATCTTGATGATGGCTTGTGCTGCATATGTTATGCATGTGAAGCAGATGCTCAAATTGCACCTTGTTCACACAGGTCTTGTTATGGCTGCATAACCAGGCACCTTTTGAATTGCCAGAGATGTTTCTTTTGCAACGCAACAGTGACCGACGTTAGCAAAATCAGTAACTGA 3813 0.4138 MAEDSPRVGGFSAGLAVILNGEDGKKLPKTRLLSCCDDLGQQSVERTLEYIFGLSNRSLNSLTAPVDRDFIRSLIRNDFSRNNVKLSDSHGERDGICVNSKKGNGPNVIGLEESSICGDIKVIKSPFLIESMAMFSSARASACVWKGKWMYEVMLETSGIQQLGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKDAETYGQSWVVGDIIGCCIDLDRDEILFYRNGNSLGVAFQGIRKLGPGFGYYPAVSLSQGERCELNFGARPFKYPIEGYLPLQAPPSKSYFVTQLLQCWSRLLDMHSVERAEHSLFQKLRRVKRFVSLEEIFHPASYAICEELFSILEADVGITEYMVWGPLLSFMFEVFGLHAPHDYLSLDKVVEVLLKFQGSHVLFEHILNALSCGCKIASLVLIECPYSGSYSHLALACHLLRREELMVLWWKSLDFEFLFEGFLSQKTPNKQDLDSMIPTVWWPGSCEDASYEGNMMLTTTALSESISKIEEKHRDLCRLVIQFIPPTNPPQLPGAVFRTFLQSLLLKNRGVERNIPPPGVSSNSVLVSIYTVVLHFLSEGFALGDICGWLKSCKADVGFLHRGGEQSFPVHLFLKNDSHRADISRLGGSYSHLSKLHPTVDHEIEVIQWDEGCMDREETRVTHSTRQKPCCCSSYDSDFTRNFKVPAKYLAKGSRGHCSSIPERSAHVAAECSDGSLDDEITDKPSSSDQSEPEYGYRQVHHMKSVPKDTNLSAATLREEELLDALLWLYHVGLAPNFKQASYYMTHQAQSISLLEETDKQIRERACSEQLKHLKEARNEYREEVIDCVRHCAWYRISLFSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYIPEYYLEALVDCFHVLRKSDPPFVPSTIFIKRGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLATFESNEAATQRMPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSVLFQRLLREACINDEGLFSSFLNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCCVIFDLSCNLTRILEFCTREIPQAFLSGPDTNLRRLTELVVFILNHITSAADAEFFDLSLRRHSQPPEKVNRGMILAPLVGIILNLLDATNSAEYRENNDLLDVFASMDCPDTVQYGFQYLLDYNWDGSFRGEAYVAKYEQLENFLSLLTCRTMSQHDKVDSVGDTTDLDDGLCCICYACEADAQIAPCSHRSCYGCITRHLLNCQRCFFCNATVTDVSKISN 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0598 1270 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 40 1269 IPR045129 GO:0004842
Aed10g0598 1270 SMART SPRY_3 146 268 IPR003877 GO:0005515
Aed10g0598 1270 Pfam Ubiquitin elongating factor core 725 957 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Aed10g0598 1270 Gene3D - 120 296 IPR043136 -
Aed10g0598 1270 Coils Coil 796 816 - -
Aed10g0598 1270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1214 1269 IPR013083 -
Aed10g0598 1270 MobiDBLite consensus disorder prediction 705 719 - -
Aed10g0598 1270 Pfam SPRY domain 148 266 IPR003877 GO:0005515
Aed10g0598 1270 ProSiteProfiles Zinc finger RING-type profile. 1221 1255 IPR001841 -
Aed10g0598 1270 ProSiteProfiles B30.2/SPRY domain profile. 75 269 IPR001870 -
Aed10g0598 1270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 40 1269 - -
Aed10g0598 1270 SUPERFAMILY Concanavalin A-like lectins/glucanases 132 281 IPR013320 -
Aed10g0598 1270 MobiDBLite consensus disorder prediction 704 734 - -
Aed10g0598 1270 CDD RING-HC_RNF123 1219 1259 - -
Aed10g0598 1270 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 137 IPR045737 -
Aed10g0598 1270 CDD SPRY_RNF123 137 265 IPR035773 -
Aed10g0598 1270 SUPERFAMILY RING/U-box 1212 1264 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0598 K12169 - gmx:100800617 2464.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0598 10 4799906 4813514 Aed10g0598 10 4799906 4813514 ECH