Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0596 ATGGAGAAGCTTGGATGTTTTCCTTCGGTAGTGACCTTCAATGCTCTTATGGATGGACTGTTCAGGGCTGGTAAATTTGAGGAGGCAAAGCATTTATCTTACAAGATGGAGACTGGGAGAAGTCCTTCGTTATGCTTACGGCTTTCTCAGGGTTCTGATAAGGTTTTAGATAGTGTTAGTCTCCAGAAAGAGGTGGATCAAATGTGTGAGGCTGGACAAATTTTGGGTGCATACAAGCTTCTCATTCAACATGCTGGTGGTGGGGTTGTGCTGGACATTGTGACGTACAACATTCTAATCAACGGCTTTTGCAAGGCTTCTAATATCAATGGTGCTTTAAACCTTTTCATGAATTTGCAAACCAAGGGCGGCTTCTCACCTAACACTGTTACTTATGGGACACTTATTGATGGGTTTTTCAGTGTTGGCAAAGAAGAGGATGCCTTTAAGATTTGTGATGAGGGAAACAGTCTCGTCGCTTCCAGGGATAAGGCAGCATACATTTACCCTTCGCGGAACCCTGCAGGTTGGAACCTTGTTCACTCTATGAAATAG 555 0.4378 MEKLGCFPSVVTFNALMDGLFRAGKFEEAKHLSYKMETGRSPSLCLRLSQGSDKVLDSVSLQKEVDQMCEAGQILGAYKLLIQHAGGGVVLDIVTYNILINGFCKASNINGALNLFMNLQTKGGFSPNTVTYGTLIDGFFSVGKEEDAFKICDEGNSLVASRDKAAYIYPSRNPAGWNLVHSMK 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0596 184 TIGRFAM PPR: pentatricopeptide repeat domain 11 37 IPR002885 -
Aed10g0596 184 TIGRFAM PPR: pentatricopeptide repeat domain 94 129 IPR002885 -
Aed10g0596 184 TIGRFAM PPR: pentatricopeptide repeat domain 130 154 IPR002885 -
Aed10g0596 184 Pfam PPR repeat 5 32 IPR002885 -
Aed10g0596 184 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 127 IPR002885 -
Aed10g0596 184 PANTHER OS09G0110200 PROTEIN 1 154 - -
Aed10g0596 184 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Aed10g0596 184 Gene3D Tetratricopeptide repeat domain 45 158 IPR011990 GO:0005515
Aed10g0596 184 Gene3D Tetratricopeptide repeat domain 1 44 IPR011990 GO:0005515
Aed10g0596 184 Pfam PPR repeat family 92 140 IPR002885 -
Aed10g0596 184 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0596 Aed-Chr10 4781951 4784776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0596 5 169 Miscellaneous Gene Families AT4G11690 29.518 2.00e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0596 - - gmx:100788461 233.802