Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0573 ATGCTCCATAACAAGTCCTTCGTCAAGAAGACCAAAGGTGGCAAAGTCATGAAGCAAGTGCGGGAGCACTACCTGCGCGACGATATATACTGCGGCGCGCCGTCTTGCACCGTTTGCGATTCTTCGGGTGCTCGCCTCAGTGCTTCTCCTTCCACCATTCTCGTTGTTGACACCAATGTCGTTCTCAACCAGATTGATTTGCTGGAGAATCCGGCAATCGACAATGTTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAACATGTCTGTTTACAACCGCATAAGATCTATCTGTAGCAATTCCATGAGAAAGTTCTTTGTTTTTTCCAATGAATACCACAGGGATACATATATTAAGGAAATGAGTGGTGAAACAAAAAATGATAGGAATGATAGAGCCATTAGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTTTTGCTTATAACTAATGATAAAGAGAACAAAAGGAAGGCTAGTGAGGAGGGCATTCTGGCCGAAACAGTTGAGTCATACGTGAAGTCTTTGGACCAACCTGATTTACTTGACCTGCTTGTGCGGCCTTCATCAGAAGATGTGCACATGGAAGAGGTTGAAGATCATAGACCATCCAAGAGGAAAGTCATCTATTCTGAGCATAAGCCGATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATACCATCAAGGGAAACTTCGTGTAAACCGTTATAATCCATTTGAAGCATATGTTGGGAGTGAGAGCATTGGTGATGAAATAATTATTTATGGGCGCTCAAACATGAATCGAGCATTTGATGGGGATATTGTGGCAGCTGAACTTCTGCCTCAAGATCAGTGGCAAGGAGACTCGTCTCTATCTATAGCCCGTGAAGAAGACGAGGATGAGGATGAGGATGTTCATCTAGCTCCAAATAGTGCTGATGATGCACCTAGAACTGTTCCTCAGCAGGGCTCTTCTAAACAAGTAAATGCTGTACCCAGTCGTCCTTCTGGTCGTATTGTTGGCATTATAAAGAGAAATTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCTGGGAGTGGTGGTATTGCGCATGCTTTGTTTGTCTCCAAAGATCGCAGAACTCCCAAGATTCGAATCCAAACTCGTCAACTTGAGAACCTTTTGGATAAGAGGATTATTGTGGCAGTTGATTCTTGGGATCGTCAGTCTCGATATCCATCAGGCCATTATGTGCGAACAATAGGGGAGATAGGTGATAGAGATACTGAAAGCGAGGTGGTTTTGATAGAAAATGATATAAATAACGACCATTCTCTTCACAAGAAGGATTTGCGTCATCTGCGTGTCTTCAGTGTGGACCCTCCAGGCTGCAAGGATATTGATGATGCACTCCACTGTCACACCCTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATTGCTGATGTGACAAATTTTGTTCACCCTGGCACTCCCCTTGATGATGAGGCTGCACAAAGGGGTACATCTGTCTACCTTGTTGAGCGGCGGATAGACATGCTTCCCAAACCTCTTACGGAGGACATATGTTCTCTTCGTTCTGATGTGGAAAGGCTTGCATTCTCTGTCATATGGGAAATGACACCTGAAGCAGACATTATTTCCACCACATGCACAAAAACTGTCATAAAATCTTCTGCAGCATTGTCTTATGTTGAAGCACAAGCAAGGATGGATGATAGTCGATTGATGGATCCGATTACTGCAGATTTGAGGAATATGAATAGTTTAGCTAAGAAAATGAGATTAAGGCGTATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAAGTCAAATTTCAAATTGACACGGAGACTCATGACCCACTTGATATTGGAATGTACCAGATCCGGGAGGCCAATCAAATGGTGGAAGAGTTTATGCTTGCAGCGAATGTTTCTGTTGCACAACAAATTCTTAAAAGTTTTCCATTGTGCTCATTATTAAGGCGCCATCCAACACCAACCAGAGAGATGCTTGAACCCTTGCTACGGACTGCTGCTGCAATTGGCTTGCATTTGGATGTCTCGTCATCAAAAGCGTTGGCTGATTCACTTGACCATGCTGTGGGTGATGATCCATACTTCAATAAGTTGATCCGTATACTGGCAACTAGGTGCATGACTCAGGCAGTTTATTTCTACAGTGGGGATCTTAGCCCTCCAGAATATCATCATTATGGGCTTGCAGCTCCTTTGTATACCCATTTCACATCACCTATAAGAAGATATGCAGATGTCATTGTGCACAGGCTACTTGCTGCTTCTTTAGAGATATCCAAGTTACCGTCTGTATTTCAAGACAGACTCCAGCTCACTAGTATTGCAGACAATTTAAATTATCGGCACAGGAATGCCCAGTATGCAGGACGGGCATCTGTAGAGCTACACACTCTAATTTATTTCAGGAAGAGGCCTACAGACACGGAGGGTAGAATAGTGAAAATAAGATCTAATGGATTTTTTGTGTTTGTTCCCAAATATGGCATAGAAGGACCTGTATATTTGACAAAAGCAGAAAAGGGAAGTGGAGAATGGTATGTAGATGAACAACTGCAGAAGATTAAAAAGATGGATGGCAGTCTTTCATACAGCGTTTTGCAGACAGTCCAAATTCACATGGAGGTTGTGGAGCCTCAGCCTAACCGCCCAAAACTTCAGCTTACTCTCCTCTAG 2739 0.4337 MLHNKSFVKKTKGGKVMKQVREHYLRDDIYCGAPSCTVCDSSGARLSASPSTILVVDTNVVLNQIDLLENPAIDNVVVLSIVLEEVKNKNMSVYNRIRSICSNSMRKFFVFSNEYHRDTYIKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDKENKRKASEEGILAETVESYVKSLDQPDLLDLLVRPSSEDVHMEEVEDHRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRSNMNRAFDGDIVAAELLPQDQWQGDSSLSIAREEDEDEDEDVHLAPNSADDAPRTVPQQGSSKQVNAVPSRPSGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIAHALFVSKDRRTPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGEIGDRDTESEVVLIENDINNDHSLHKKDLRHLRVFSVDPPGCKDIDDALHCHTLPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIISTTCTKTVIKSSAALSYVEAQARMDDSRLMDPITADLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILKSFPLCSLLRRHPTPTREMLEPLLRTAAAIGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMTQAVYFYSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLEISKLPSVFQDRLQLTSIADNLNYRHRNAQYAGRASVELHTLIYFRKRPTDTEGRIVKIRSNGFFVFVPKYGIEGPVYLTKAEKGSGEWYVDEQLQKIKKMDGSLSYSVLQTVQIHMEVVEPQPNRPKLQLTLL 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0573 912 MobiDBLite consensus disorder prediction 319 336 - -
Aed10g0573 912 CDD PIN_Rrp44-like 9 180 - -
Aed10g0573 912 Gene3D - 351 426 - -
Aed10g0573 912 SUPERFAMILY Nucleic acid-binding proteins 434 825 IPR012340 -
Aed10g0573 912 Pfam Dis3-like cold-shock domain 2 (CSD2) 373 440 IPR041505 -
Aed10g0573 912 PANTHER EXOSOME COMPLEX EXONUCLEASE RRP44 3 912 - -
Aed10g0573 912 SUPERFAMILY Nucleic acid-binding proteins 215 423 IPR012340 -
Aed10g0573 912 ProSitePatterns Ribonuclease II family signature. 747 771 IPR022966 -
Aed10g0573 912 SMART RNB_2 449 780 IPR001900 GO:0003723|GO:0004540
Aed10g0573 912 Pfam RNB domain 450 778 IPR001900 GO:0003723|GO:0004540
Aed10g0573 912 PANTHER RIBONUCLEASE 3 912 - -
Aed10g0573 912 Pfam S1 domain 829 898 IPR033770 -
Aed10g0573 912 SUPERFAMILY PIN domain-like 52 186 IPR029060 -
Aed10g0573 912 MobiDBLite consensus disorder prediction 298 338 - -
Aed10g0573 912 Gene3D - 9 192 - -
Aed10g0573 912 Pfam Rrp44-like cold shock domain 219 308 IPR033771 -
Aed10g0573 912 Gene3D - 829 912 IPR012340 -
Aed10g0573 912 Gene3D - 206 312 - -
Aed10g0573 912 SMART PIN_9 52 165 IPR002716 -
Aed10g0573 912 SUPERFAMILY Nucleic acid-binding proteins 829 908 IPR012340 -
Aed10g0573 912 Pfam PIN domain 54 177 IPR002716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0573 Aed-Chr10 4601276 4616980 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0573 K12585 - gmx:100806652 1722.98