Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0422 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTGCTCCAACTCCATTGGGATTGAATACTAAGTTTTCTACCACTCATCGTCATAAGAGACCTTTAACTACTGTTGCATTTAAAGGGGATAAGCACAATGGCTCAGCTTTGGTTGCGACTCAAGAGATAATTCCCGTGCCGGTTGAAACGGCAAAGAAGAAGACGCAGAAAAAAAGGATAGGAAAAACTAACAAACTACCTAAGAGAGAAGAAAGTTCAACAACATCTTCCTTGGATGTGGACTACAATGAAGCTGCTGCTATGCTTGAAAATATATACAAACTAAGCCCGGCTTCCGATACCGAATGTATAGATGGTAAGATCAAAAGAGTCTCTCGGAGAGGGAAGAGGGTTGTTGTTGATAATGAAAGTGAAGTAAAGGAGTTAAAGGGTGATAGGGTGGTCAGAAACCAGAACAAGAAAGCTAAAAGATTGAATCTTGATCAGAGAGTTTCGTTAAAGAATAACCAAAGTGAGGACCAAGTCATTCCAACTCCAAAGAAAAGAAATGTTAGGAACAGAATTGAGAAGATTGAAGAACTTATTAGGGAATATTCAGGATCAACTGATTTTGTCAGTATGGATTGGAAAAGAATGAGAATACCTCCGGTTCTTTCTTCTTCAGAGCATGCTTGGTTGTTCAAATTGATGCAACCTACGAAGGCACTGCTTCGAGTGAAAGAAGAATTACAGAAGGAGCTAGCAAGAGAACCTGCAGATGGTGAACTAGCTGATGCAACAAACATGAGCATTGCTCAAGTAAAGAAAGCAATAGAGGTTGGTCATGCTGCAAGAAACAAACTCATAAAGCACAATCTCCGGCTAGTCTTGTTCGTGATCAACAAATATTTTACAGATTTTGCAAGTGGCTCTAGGTTTCAAGATCTTTGTCAGGCAGGAGTTAAGGGACTTATAACAGCAATTGATCGGTTTGAGCCAAACAGGAGATTTAGGCTATCAACATATAGTTTGTTTTGGATAAGACATGCTATCATTCGTTCGATGACCCTCTCAAGCTTCACACGCGTTCCCTTTGGACTTGAAACGGTTAGATCAGAAATCCAAAAAGTTAAAACTGAGTTAACATTTGAGCTTCAGAGGTCGCCATCAGAAGAAGAAATAATAGAAAGAGTTAATATATCCCCTGAAAGATACCATGACGTGATTAAGGCATCTAAATCCATTCTTTCGCTGAACTCAAGACATGTAACCACACAAGAGGAGTTCATCAAAGGGATCGTTGATGATGATGGTGTTAATGGATATAATAGGAAGCAACCGGCTCTACTGAGGCTTGCTCTTGATGATGTGGTAACAACTCAATTTCTTGAGACTTTGTTTGAGCCTGCATTTCTCACTATGCTTGATTCCCTGAAGCCGAAGGAGAGCTTGGTGATCAGACAGAGATTTGGACTTGATGGCAAGGGTGACAGAACGTTGGGAGAAATAGCTGGGAACTTGAATATATCAAGGGAAATGGTGAGAAAGCACGAAGTCAAGGCTCTTATGAAGCTCAAGCATGAAGCTCGATTGGATTATCTTCGTCGTTATGTTGTGTAA 1587 0.4045 MGVVTVSSSAAPTPLGLNTKFSTTHRHKRPLTTVAFKGDKHNGSALVATQEIIPVPVETAKKKTQKKRIGKTNKLPKREESSTTSSLDVDYNEAAAMLENIYKLSPASDTECIDGKIKRVSRRGKRVVVDNESEVKELKGDRVVRNQNKKAKRLNLDQRVSLKNNQSEDQVIPTPKKRNVRNRIEKIEELIREYSGSTDFVSMDWKRMRIPPVLSSSEHAWLFKLMQPTKALLRVKEELQKELAREPADGELADATNMSIAQVKKAIEVGHAARNKLIKHNLRLVLFVINKYFTDFASGSRFQDLCQAGVKGLITAIDRFEPNRRFRLSTYSLFWIRHAIIRSMTLSSFTRVPFGLETVRSEIQKVKTELTFELQRSPSEEEIIERVNISPERYHDVIKASKSILSLNSRHVTTQEEFIKGIVDDDGVNGYNRKQPALLRLALDDVVTTQFLETLFEPAFLTMLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHEARLDYLRRYVV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0422 528 Gene3D - 267 345 - -
Aed10g0422 528 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 459 526 IPR013324 -
Aed10g0422 528 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 528 - -
Aed10g0422 528 Pfam Sigma-70 region 3 231 270 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aed10g0422 528 Pfam Sigma-70 region 3 361 428 IPR007624 GO:0003700|GO:0006352|GO:0006355
Aed10g0422 528 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 273 517 IPR014284 GO:0003700|GO:0006352|GO:0006355
Aed10g0422 528 Pfam Sigma-70, region 4 464 516 IPR007630 GO:0003700|GO:0006352|GO:0006355
Aed10g0422 528 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 528 - -
Aed10g0422 528 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 196 344 IPR013325 GO:0003700|GO:0006352|GO:0006355
Aed10g0422 528 Gene3D - 451 528 IPR036388 -
Aed10g0422 528 PRINTS Major sigma-70 factor signature 304 317 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed10g0422 528 PRINTS Major sigma-70 factor signature 328 336 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed10g0422 528 PRINTS Major sigma-70 factor signature 467 479 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed10g0422 528 PRINTS Major sigma-70 factor signature 503 514 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed10g0422 528 PRINTS Major sigma-70 factor signature 488 503 IPR000943 GO:0003700|GO:0006352|GO:0006355
Aed10g0422 528 Pfam Sigma-70 region 2 277 343 IPR007627 GO:0003700|GO:0006352|GO:0006355
Aed10g0422 528 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 352 424 IPR013324 -
Aed10g0422 528 Coils Coil 177 197 - -
Aed10g0422 528 MobiDBLite consensus disorder prediction 59 86 - -
Aed10g0422 528 Gene3D - 350 402 IPR036388 -
Aed10g0422 528 Gene3D - 224 266 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0422 Aed-Chr10 3411503 3414308 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0422 K03093 - gmx:100812580 834.328