Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0406 ATGGCACCAACAGTGTCATCAACTTTTGAGTCAGAGAGGGAGCCTGTGAGATTTGTGCACACAGTTTCAGAGTCAGGTCGGCTTCTTCCTTCAGCTAGCCGATGGAACTCCATAGCACTAAACTTCAAACTTGCTCCTAAATCCTCCACTGCCTATGAATCTATCCCTTCACAATATCCAAAATCGGTTGACTACAATCTTGTTATCACTGACAGAAAGCACTTTCATTGTTTTATTGTTGCTTTGGTAACATTAATTTTGGCCATCTTAGCAGCTTCTCTGTTGGCACACTTTTTAACTCAGAAGCACAAGCATCAAGGGCCTTCAATCAATCTCAAACTCGCAATAAACCAGGCTCTAACGTTTTATGATGCTCAAAAATCTGGACAATATCCTAGGAACAGTCCAGTGAAATTTCGAGGAGATTCTGGATTACATGATGGAGATTCTGCTAAGACTAATCTTATTGGTGGATTTTATGATTCTGGCAACAACATCAAGTTCACCTTCACCACAGCTTATACTATGACCTTGTTGAGTTGGACTGTTATGGAATATCAAAGTAAATATGCTGATATTGGTGAGCTTGATCATGTGAGGGACATCATCAGATGGGGTAGTGACTACCTGCTCAAGGTTGGAAGTACCATTAGTAATAACAATGACCAAAATGATTTGAGTTGCTGGCAACGACCTGAAGATATTAAATATGAGAGACCAGTTTCAACTTGTGATGGCTCTGCTTCAGATTTAGCTGGTGAAATTGTGGCAGCATTATCTGCATCATCGATGGTATTCAAAGAAGATAAAGATTACTCAAGGAGACTAGTCCAAGCAGCAGAAAGCCTCTTTGAGGTGATCACAAATGAAGACCCTTCAGAACAAGGGACCTACACCATGGTTGATGCATGTGGAAAACAAGCAAGAATGCTTTATAACTCGACTAGCTACAAAGATGAGTTGGCTTGGGGAGCAACATGGTTATTTCTAGCTACTGAAAACGCTGATTACCTTGCAACTGCAACTGATTTTTTTTTATCAGCCAAGAGTGATGAACCAAGTGTTGACAAAGGAGTTGTTTATTGGAATAACAAGCTCAATGCAGTGGAGCATCTTTTCTCAGTAAATTGTACAGTGATTACCTTGATCATCTCAAAATGTCTGGTGCAAGTTGCAAGACTGATGAATTCTCGGTGGAAATGCTTCGCGATTTTGCTACTTCTCAGGCAAATTCCTAGCCTCCTCATGACTATTTGCATTGTTAGCTACATCTTGGGACAAAACCCTATGAAAATGAGCTACTTAGTGGGCTATGGTGACAGGTTTCCTCTCCAGGTTCATCACAGAAGTGCATCAATCCCTTGGAATAACCAACCCTATGATTGTGACGAGGGTAAGAAATGGCTAAACTCTAAAGATCCAAATCCACAGGTTCTTTTGGGAGCCATGGTGGGAGGGCCAGACACTAATGATAATTTCATGGATCAAAGGACCAACCAAAAGTTCACTGAGCCAAACATAGCCAGCAATGCTGGCTTAGTTGCAGCACTTATTGCACTTCAAGATCCTCCTTATAATTCACGTGACTTCAAAAACTCGCTGTGGGGATGGACTTGA 1617 0.4131 MAPTVSSTFESEREPVRFVHTVSESGRLLPSASRWNSIALNFKLAPKSSTAYESIPSQYPKSVDYNLVITDRKHFHCFIVALVTLILAILAASLLAHFLTQKHKHQGPSINLKLAINQALTFYDAQKSGQYPRNSPVKFRGDSGLHDGDSAKTNLIGGFYDSGNNIKFTFTTAYTMTLLSWTVMEYQSKYADIGELDHVRDIIRWGSDYLLKVGSTISNNNDQNDLSCWQRPEDIKYERPVSTCDGSASDLAGEIVAALSASSMVFKEDKDYSRRLVQAAESLFEVITNEDPSEQGTYTMVDACGKQARMLYNSTSYKDELAWGATWLFLATENADYLATATDFFLSAKSDEPSVDKGVVYWNNKLNAVEHLFSVNCTVITLIISKCLVQVARLMNSRWKCFAILLLLRQIPSLLMTICIVSYILGQNPMKMSYLVGYGDRFPLQVHHRSASIPWNNQPYDCDEGKKWLNSKDPNPQVLLGAMVGGPDTNDNFMDQRTNQKFTEPNIASNAGLVAALIALQDPPYNSRDFKNSLWGWT 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0406 538 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 423 449 IPR018221 -
Aed10g0406 538 PANTHER ENDOGLUCANASE 417 533 - -
Aed10g0406 538 PANTHER ENDOGLUCANASE 26 373 - -
Aed10g0406 538 PANTHER ENDO-1,4-BETA-GLUCANASE 417 533 - -
Aed10g0406 538 PANTHER ENDO-1,4-BETA-GLUCANASE 26 373 - -
Aed10g0406 538 SUPERFAMILY Six-hairpin glycosidases 110 522 IPR008928 GO:0005975
Aed10g0406 538 Gene3D - 109 389 IPR012341 GO:0005975
Aed10g0406 538 Pfam Glycosyl hydrolase family 9 421 517 IPR001701 GO:0004553|GO:0005975
Aed10g0406 538 Pfam Glycosyl hydrolase family 9 115 374 IPR001701 GO:0004553|GO:0005975
Aed10g0406 538 Gene3D - 417 531 IPR012341 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0406 Aed-Chr10 3283475 3286114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0406 61 520 Glycoside Hydrolase AT1G65610 34.897 6.45e-94 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0406 K01179 - gmx:100805472 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0406 10 3283475 3286114 Aed10g0406 10 3283475 3286114 ECH