Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0397 ATGGTGGTCACATCCTCTGCGCGCGATTACATAAACCGCATCTTGCATGACATCTCCGGCATGAAGGTCCTCATCCTCGATTCTCAAACGGTAGGTGTTGTGAGTGTTGTGTATTCACAGTCAGAGCTTCTTCAGAAAGAAGTGTTTTTGGTAGAATTGGTAGATTCTATTTCCAAGTCAACCGAATCAATGTCGCATCTCAAGGCTGTTTACTTCCTTCGACCTACATCAGAGAATATTCAGTTTTTGCGCCGCCAGCTGGCTAGTCCTAGATTTGGAGAGTATCATCTATTTTTCTCCAACATATTGAAGGACACTCAGATTCACCTACTTGCTGATTCAGATGAACAGGAAGTTGTCCAGCAAGTTCAGGAGTTCTATGCAGATTTTGTTGCAATTGATCCTTATCATTTCACTTTGCACGTGCCTTCACATTATGTATATATGCTCCCAGCTGTGGTAGATCCTTCAACAGTGCAGCGCTTCTGTGACCGGGTTGTTGATGGTCTTGCAGCTCTTTTTTTGGCATTAAAACGAAGACCAGTAATTAGGTATCAAAGGACATCTGACATTGCAAAAAGGATAGCACAGGAAGCATCTAAACTGATGTACCAAGAGGAAAGTGGCCTTTTTGATTTTAGGCGAATGGAAGTTTCTCCACTTCTGTTAGTGATTGACAGGAGGGATGATCCTGTAACCCCATTGCTAAATCAATGGACCTATCAGGCTATGGTTCATGAATTAATAGAAATCCAAGACAACAAAGTGGACTTAAAATCCATTGGTAAATTTCCAAAGGATCAGGAGGAGGTTGTGTTGTCATCAGAACAAGATCCCTTTTTCAAAACTAACATGTATGAGAATTTTGGAGATATAGGTATGAATATCAAGCGGATGGTTGATGAATTTCAGCAAGTGTCACAAAGTAACCAGAACATCCAAACAATAGAGGACATGGCCAAATTTGTTGATAATTATCCCGAGTACAGAAAAATGCATGGAAATGTGACCAAACATGTGACTTTAGTAACTGAACTGAGCAAGATAGTTGATGAGCGAAAACTTATGTCAGTTTCACAAACAGAACAGGAGTTGGCTTGCAATGGAGGACAAGGAGCTGCTTTTGAGGCAGTGACAAATCTACTAAACAATGAAAGCATATCAGATCTGGATCGACTACGTTTGGTCATGCTGTATGCTTTACGATATGAGAAAGATAGCCCTGTTCAATTAATGCAGCTCTTCAACAAACTGGCTTCCAGATCTGCCAAGTACAAACCTGGGCTTGTCCAGTTTCTTCTGAAGCAAGCAGGTGTTGACAAGAGAACGTCTGATCTTTATGGAAATCGAGATTTAATGAATATTGCCCGTAACATGGCTCGTGGTTTGAAGGGCGTTGAGAATGTTTACACCCAGCACCAGCCATTTCTGTTTCAAATCATGGAAAGCATTGTCAAAGGGAGGTTGAGAGATGTGGACTACCCGTTTGTTGGAAATCACTTTCAACAGGGAAGGCCGCAGGATGTGATCATCTTCATTGTTGGTGGGACAACTTATGAGGAGTCACGGTCTGTTGCTTTACAAAATGCCAGCAATACCGGCATTCGTTTTATTCTTGGTGGCTCTTCTGTTCTTAATTCTAAAAGGTTTTTAAGGGACTTGGAAGAAGCTCAAAGGGTAGCTCGTTCTAGCACTATTGCTTGA 1704 0.4161 MVVTSSARDYINRILHDISGMKVLILDSQTVGVVSVVYSQSELLQKEVFLVELVDSISKSTESMSHLKAVYFLRPTSENIQFLRRQLASPRFGEYHLFFSNILKDTQIHLLADSDEQEVVQQVQEFYADFVAIDPYHFTLHVPSHYVYMLPAVVDPSTVQRFCDRVVDGLAALFLALKRRPVIRYQRTSDIAKRIAQEASKLMYQEESGLFDFRRMEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIEIQDNKVDLKSIGKFPKDQEEVVLSSEQDPFFKTNMYENFGDIGMNIKRMVDEFQQVSQSNQNIQTIEDMAKFVDNYPEYRKMHGNVTKHVTLVTELSKIVDERKLMSVSQTEQELACNGGQGAAFEAVTNLLNNESISDLDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTSDLYGNRDLMNIARNMARGLKGVENVYTQHQPFLFQIMESIVKGRLRDVDYPFVGNHFQQGRPQDVIIFIVGGTTYEESRSVALQNASNTGIRFILGGSSVLNSKRFLRDLEEAQRVARSSTIA 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0397 567 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 555 IPR001619 GO:0016192
Aed10g0397 567 Pfam Sec1 family 22 553 IPR001619 GO:0016192
Aed10g0397 567 Gene3D - 2 128 IPR043154 -
Aed10g0397 567 PIRSF VPS45_Sec1 1 565 IPR001619 GO:0016192
Aed10g0397 567 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 555 - -
Aed10g0397 567 Gene3D - 138 555 IPR027482 -
Aed10g0397 567 Gene3D - 353 474 - -
Aed10g0397 567 SUPERFAMILY Sec1/munc18-like (SM) proteins 5 556 IPR036045 -
Aed10g0397 567 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 352 IPR043127 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0397 Aed-Chr10 3220016 3227646 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0397 K12479 - gmx:100782786 1058.9