Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0392 ATGAGTCGCCGTGGAATGGACGACGACGACGACGAGTATGAGGAGGACGACGACTACGAGGAAGAGGAGGACAACCACCGAGGACGCGGCGGCGGCGGTGGCGGTGGCGGTGGCGGCAGGAAGCGGAGAAGATCTGGCTTCATAGATGACGATGCCGAGGAGGTCGACGAGGACGAGGAGGAGGATGACGATGATGACGAGGATTTCGATGGCCGAGGCGGTGGTGGCGGCGGCGGTCGGAGGCGCCAGTACAAGAAGGTTTCCGCTTCTAATTTCTTCGATGAGGAGGCGGTGGTGGATAGTGACGAGGAAGAGGAAGAGGAAGAAGGCGAAGACGACTTCATTGTTGAGGGTGGAGCTGATCTGCCAGAAGAAGATGATGGGAGAAGGATGCGTGGTAGTCGTATGCTGCCACATCACCAAGAGGATCATGAAGATCTTGAAGCTGTGGCAAGAAGCATCCAGGAACGTTATGGTAGACGCCTAACGGATTATGATGAAGAAACGACTGATGTAGAACAGCAAGCACTTTTGCCATCTGTTAGAGATCCAAAGCTGTGGATGATTGGTCGTGAGAGAGAAACAGCTGTTTGCCTCATGCAAAAGTACATAGATAAGGGGTCTGAATTGCAGATTAGGTCAGCTATTGCTCTCGATCATCTCAAAAACTATATATATGTGGAAGCAGATAAAGAAGCCCATGTCAGAGAGGCTTGCAAAGGTCTACGCAATATATTTGGCCAAAAAATAACGCTTGTTCCAATCAGAGAAATGACTGATGTTCTGTCAGTTGAAAGCAAAGCTATTGATCTTGCTAGGGATACTTGGGTCAGAATGAAGATCGGGACATATAAAGGGGACCTTGCCAAAGTAGTTGATGTTGATAATGTGCGGCAGAGGGTAACTGTCAAATTAATTCCAAGGATAGACTTACAGGCTCTTGCAAACAAATTGGAAGGTAGAGAGGTTGTGAAAAAGAAGGCTTTTGTTCCTCCTCCTCGTTTTATGAATGTTGATGAAGCAAGGGAACTGCATATCCGTGTGGAGCATAGACGCGATGCCTATGGGGAACGATTTGATGCAATTGGAGGCATGATGTTCAAAGATGGATTCTTATACAAAACTGTATCAATAAAATCCATTAGTTCTCAGAACATAAAACCTACATTTGATGAGCTTGAAAAATTTCGTAAACCGGGTGAGAGTGGAGATGGTGATGTAGCCAGTCTGTCAACATTGTTTGCAAACAGGAAGAAAGGGCATTTTATGAAAGGTGATGCTGTCATTGTTGTCAAGGGTGACTTAAAGAACTTGAAGGGAAAGGTAGAAAAAGTTGACGAAGATACTGTTCATATACGGCCAGAAATGGAGGGACTTCCAAAAACTATTGCTGTAAATGAAAAGGAACTTTGTAAATATTTTGAACCTGGAAACCACGTTAAGGTTGTTTCTGGTGCTCAAGAGGGAGCTACAGGCATGGTTGTGAAGGTGGAGCAGCATGTCTTGATCTTAATATCTGATACAACAAAAGACCATATCCGTGTATTTGCAGATGATGTTGTAGAAAGTTCAGAAGTAACTACTGGAGTTACAAGAATTGGGGACTATGAACTACGCGATCTTGTATTGCTAGAGCACAACATCTTGCCTCTGTTTGATATGGTTCAAAGTTTTCTCACTTCTGATTTAACATGGTGCAGTAATATGAGCTTTGGTGTGATAATACGTGTAGAAAGTGAGGCATTTCAGGTTCTTAAGGGGGTTTCTGACAGACCTGAAGTTGTGCTTGTTAAGTTAAGAGAGATCAAATGTAAGATAGATAAGAAAATAAGCGTGCAGGATAGGTTTAAGAATACGGTATCATCAAAGGATGTTGTGCGGATCGTTGATGGTCCCTGCAAAGGAAAACAAGGTCCTGTGGAGCACATATATAGAGGAATTTTGTTCATCTTTGATCGCCATCATCTTGAACATGCAGGCTTTATATGTGCTAAGGCCCAATCTTGCGTAGTTGTGGGAGGTTCACGCTCCAGTGGTGACAGAAATGGTGATGCCTACTCAAGATTTACCAGTCTTAGAAGTCCAAGTCGTATTCCACCATCCCCAAGGAGGTTTCCTCGAGGAGGGCCAATGGATTGTATGTCTAAAGTCTTCCCTGGAGGGAGACATAGGGGTGGAAGGGGGCATGATGGTTTGGCTGGTACAACTGTTAAAGTAAGACAGGGTCCCTATAAAGGTTACCGTGGCCGTGTTATAGATGTTAAAGGCACAACAGTTCGTGTTGAGTTGGAATCCCAAATGAAGGTTGTGACAGTTGACCGCAACCATATATCTGACAATGTGGCAGTAACCCCATATCGTGATACATCTCGCTATGGAATGGGAAGTGAAACCCCAATGCATCCTTCTCGAACTCCCTTACATCCATATATGACTCCAATGAGAGATGCTGGAGCAACACCTATTCACGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCTTATACTCCAATGAGTCCTCCAAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGAAGCCAGTCCACAGTATCAGCCTGGAAGCCCTCCTTCACGGCCATATGAAGCCCCAACTCCTGGTGCTGGTTGGGCTAACACTCCCGGTGGAAATTATAGTGAAGCTGGAACACCACGGGACAGTTCTGCCTATGCCAATGTTCCAAGCCCATATTTACCATCAACACCTGGTGGACAGCCTATGACACCAAGTTCAGCATCTTATCTTCCTGGCACCCCTGGAGGACAGCCTATGACTCCAGGCACAGGTGGTATGGACATGATGTCTCCAGTTTTAGGTGGGGAAAACGAAGGGCCATGGTTTATTCCAGATATATTAGTCAACGTACACAGGGCTGGAGATGAATCTGTTGGAGTTATAAGAGAGGCTCTCCCGGATGGCTCATACAGGGTAGCTCTTGGATCTGGTGGTAATGGTGAAACGATTACAGCCCTTCCTAATGAAATGGAGGCCGTGGTACCAAGAAAATCAGACAAAATAAAGATTATGGGTGGGGCATTGCGTGGTGCCACTGGCAAGTTGATTGGTGTAGATGGTACTGATGGAATTGTAAAGGTAGATGACACATTGGATGTCAAGATTTTAGACTTAGTTATTTTGGCAAAATTAGCTCAACCATGA 3192 0.4555 MSRRGMDDDDDEYEEDDDYEEEEDNHRGRGGGGGGGGGGRKRRRSGFIDDDAEEVDEDEEEDDDDDEDFDGRGGGGGGGRRRQYKKVSASNFFDEEAVVDSDEEEEEEEGEDDFIVEGGADLPEEDDGRRMRGSRMLPHHQEDHEDLEAVARSIQERYGRRLTDYDEETTDVEQQALLPSVRDPKLWMIGRERETAVCLMQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISSQNIKPTFDELEKFRKPGESGDGDVASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGKVEKVDEDTVHIRPEMEGLPKTIAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKDHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLEHNILPLFDMVQSFLTSDLTWCSNMSFGVIIRVESEAFQVLKGVSDRPEVVLVKLREIKCKIDKKISVQDRFKNTVSSKDVVRIVDGPCKGKQGPVEHIYRGILFIFDRHHLEHAGFICAKAQSCVVVGGSRSSGDRNGDAYSRFTSLRSPSRIPPSPRRFPRGGPMDCMSKVFPGGRHRGGRGHDGLAGTTVKVRQGPYKGYRGRVIDVKGTTVRVELESQMKVVTVDRNHISDNVAVTPYRDTSRYGMGSETPMHPSRTPLHPYMTPMRDAGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWEASPQYQPGSPPSRPYEAPTPGAGWANTPGGNYSEAGTPRDSSAYANVPSPYLPSTPGGQPMTPSSASYLPGTPGGQPMTPGTGGMDMMSPVLGGENEGPWFIPDILVNVHRAGDESVGVIREALPDGSYRVALGSGGNGETITALPNEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0392 1063 Pfam KOW motif 734 764 IPR005824 -
Aed10g0392 1063 Pfam KOW motif 476 501 IPR005824 -
Aed10g0392 1063 PIRSF Spt5 2 75 IPR017071 GO:0006357|GO:0032784
Aed10g0392 1063 PIRSF Spt5 552 1063 IPR017071 GO:0006357|GO:0032784
Aed10g0392 1063 PIRSF Spt5 50 550 IPR017071 GO:0006357|GO:0032784
Aed10g0392 1063 SMART kow_9 473 500 IPR005824 -
Aed10g0392 1063 SMART kow_9 730 757 IPR005824 -
Aed10g0392 1063 SMART kow_9 421 448 IPR005824 -
Aed10g0392 1063 SMART kow_9 270 297 IPR005824 -
Aed10g0392 1063 SMART kow_9 1010 1037 IPR005824 -
Aed10g0392 1063 SMART kow_9 619 646 IPR005824 -
Aed10g0392 1063 Gene3D - 718 780 IPR014722 -
Aed10g0392 1063 SUPERFAMILY Translation proteins SH3-like domain 414 452 IPR008991 -
Aed10g0392 1063 MobiDBLite consensus disorder prediction 8 22 - -
Aed10g0392 1063 MobiDBLite consensus disorder prediction 915 929 - -
Aed10g0392 1063 MobiDBLite consensus disorder prediction 788 807 - -
Aed10g0392 1063 Gene3D - 416 473 IPR014722 -
Aed10g0392 1063 Gene3D - 165 263 IPR036735 GO:0006355
Aed10g0392 1063 Gene3D - 270 312 IPR014722 -
Aed10g0392 1063 Pfam Early transcription elongation factor of RNA pol II, NGN section 189 262 IPR005100 -
Aed10g0392 1063 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 25 1061 - -
Aed10g0392 1063 Gene3D - 476 525 IPR014722 -
Aed10g0392 1063 CDD KOW_Spt5_1 274 311 IPR041973 -
Aed10g0392 1063 MobiDBLite consensus disorder prediction 677 697 - -
Aed10g0392 1063 CDD KOW_Spt5_3 473 523 IPR041976 -
Aed10g0392 1063 CDD KOW_Spt5_4 623 665 IPR041977 -
Aed10g0392 1063 ProSitePatterns Ribosomal protein L24 signature. 425 442 IPR005825 GO:0003735|GO:0005840|GO:0006412
Aed10g0392 1063 CDD KOW_Spt5_5 732 778 IPR041978 -
Aed10g0392 1063 CDD NGN_Euk 185 263 IPR039385 -
Aed10g0392 1063 PANTHER SUPPRESSOR OF TY 5 25 1061 IPR039659 GO:0006357|GO:0032784
Aed10g0392 1063 MobiDBLite consensus disorder prediction 820 940 - -
Aed10g0392 1063 MobiDBLite consensus disorder prediction 1 129 - -
Aed10g0392 1063 MobiDBLite consensus disorder prediction 677 711 - -
Aed10g0392 1063 SUPERFAMILY Translation proteins SH3-like domain 465 524 IPR008991 -
Aed10g0392 1063 MobiDBLite consensus disorder prediction 887 906 - -
Aed10g0392 1063 SMART nusgn_4 183 265 IPR006645 GO:0140673
Aed10g0392 1063 MobiDBLite consensus disorder prediction 51 70 - -
Aed10g0392 1063 Pfam Spt5 transcription elongation factor, acidic N-terminal 92 179 IPR022581 -
Aed10g0392 1063 MobiDBLite consensus disorder prediction 96 121 - -
Aed10g0392 1063 CDD KOW_Spt5_6 1004 1061 IPR041980 -
Aed10g0392 1063 CDD KOW_Spt5_2 422 472 IPR041975 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0392 Aed-Chr10 3188808 3198491 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0392 K15172 - gmx:100801380 1773.06