Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0391 ATGAGTTTTAACCTTGGCACATGGAGAAACAATCCATCATATTGGTTTTGTTCCATAAGGAACCACATTCAGCAAGGATCGTTGAGATGTGCTCTTCTTGCGTATAAACAAACCCGACACGAAGGAGTGTACGACTCCAGCATGGTTCCTCTGTTACTCAAGGCTTGTGCTTCTCTTCATTACGTGAAGGCCTTGCATGCAGAGTCCATCAAGGCCGGTTCAGAGAGCGACGTGATCATTGGAACCACATTGCTTACAACTTACTCCAAATGCGGCGTTGTTAGGGATGCACGTAATCTGTTTGATACAATGCCCGACAGAAATGTTGTGACTTGGAATGCCATGATCAGTGGGTACTTGAGAAATGGAGATACGGAATCTGCTACTCTTGTGTTTGAGAAGATGCAGGGGAAAACGCGAGTGACTTGGAGTCAGATGATTGGTGGGTTTGCTAGGAATGGTGATATTGCCGCTGCTAGGAGGTTGTTTGATGAGGTTCCCCATGAGTTGAAGGATGTGGTGACATGGACTGTGATGGTTGATGGGTATGCTAGAATAGGGAACATGGAAGCTGCCAGGGAGGTCTTTGAGATGATGCCTGAAAGGAATTGCTTTGTGTGGTCGTCTATGATTTATGGGTACTTCAAGATGGGCAATGTCACTGAAGCTGAGGCTGTTTTTGACCGAGTTAAGGTTCGGAATTTGGAGATTTGGAACTCCATGATTGCTGGCTATGTCCAAAATGGATTTGGGGAGAAAGCATTGCAAGCTTTTGAGGGAATGGGAGCAGAAGGGTTTGAGCCGGATGAGTTCAGTGTTGTTAGTGTTTTATCTGCTTGTTCTCAGCTGGGGTGCCTGGATGTTGGTAGGCAAATCCATCACATGATAGAACACAAAGGGATAGTTGTGAACCCGTTTGTGTTGAGTGGATTGGTTGACATGTATGCCAAATGTGGTGACTTGGTCAATGCAAGGTTGGTATTTGAAGAGTTCACTGAGAAGAACATATTCTGCTGGAATGCTATGATTTCGGGCTTTGCCATCAACGGAAAATGCAGGGAGGTTCTTGAGTTTTTTAGCAGGATGGAGGACTCAAGTATAAGGCCTGATGGTATCACCTTTCTTACTGTGCTTTCGGCTTGTGCTCATGGGGGTTTGGTCAGTGAAGCTTTGGAAGCAATATCTAAAATGGAGGGATATGGAATTGAAATAGGAATCAAGCATTATGGATGCATGGTTGACCTCTTGGGCAGAGCAGGGAGATTAAAAGATGCTTATGACTTGATAGTAAGAATGCCAATGAAACCTGACGACACTGTTTTAGGGGCAATGCTTGGAGCATGCCGGATTCATTCAGATATGAGCATGGCAGAACAAGTAATGAAGTTGATCGGTGAAGACCCTCTTACAGGTGCTAATTCTCACAATGTGCTCTTGTCAAATATCTATGCAGCTTCTGAAAAATGGGAGAAAGCTGAATGGATGAGGGGGGCCTTGGTAGATGGAGGGTCTCAAAAGACACCCGGGTGTAGTGCAGTAATCTTTTAG 1548 0.4503 MSFNLGTWRNNPSYWFCSIRNHIQQGSLRCALLAYKQTRHEGVYDSSMVPLLLKACASLHYVKALHAESIKAGSESDVIIGTTLLTTYSKCGVVRDARNLFDTMPDRNVVTWNAMISGYLRNGDTESATLVFEKMQGKTRVTWSQMIGGFARNGDIAAARRLFDEVPHELKDVVTWTVMVDGYARIGNMEAAREVFEMMPERNCFVWSSMIYGYFKMGNVTEAEAVFDRVKVRNLEIWNSMIAGYVQNGFGEKALQAFEGMGAEGFEPDEFSVVSVLSACSQLGCLDVGRQIHHMIEHKGIVVNPFVLSGLVDMYAKCGDLVNARLVFEEFTEKNIFCWNAMISGFAINGKCREVLEFFSRMEDSSIRPDGITFLTVLSACAHGGLVSEALEAISKMEGYGIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRMPMKPDDTVLGAMLGACRIHSDMSMAEQVMKLIGEDPLTGANSHNVLLSNIYAASEKWEKAEWMRGALVDGGSQKTPGCSAVIF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0391 515 Gene3D Tetratricopeptide repeat domain 139 202 IPR011990 GO:0005515
Aed10g0391 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 169 IPR002885 -
Aed10g0391 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Aed10g0391 515 Gene3D Tetratricopeptide repeat domain 306 515 IPR011990 GO:0005515
Aed10g0391 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Aed10g0391 515 Gene3D Tetratricopeptide repeat domain 203 304 IPR011990 GO:0005515
Aed10g0391 515 Gene3D Tetratricopeptide repeat domain 16 138 IPR011990 GO:0005515
Aed10g0391 515 PANTHER BNACNNG13520D PROTEIN 11 513 - -
Aed10g0391 515 TIGRFAM PPR: pentatricopeptide repeat domain 141 165 IPR002885 -
Aed10g0391 515 TIGRFAM PPR: pentatricopeptide repeat domain 237 270 IPR002885 -
Aed10g0391 515 TIGRFAM PPR: pentatricopeptide repeat domain 110 136 IPR002885 -
Aed10g0391 515 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Aed10g0391 515 TIGRFAM PPR: pentatricopeptide repeat domain 174 204 IPR002885 -
Aed10g0391 515 TIGRFAM PPR: pentatricopeptide repeat domain 206 235 IPR002885 -
Aed10g0391 515 TIGRFAM PPR: pentatricopeptide repeat domain 372 404 IPR002885 -
Aed10g0391 515 Pfam E motif 472 513 IPR046848 -
Aed10g0391 515 SUPERFAMILY TPR-like 8 229 IPR011990 GO:0005515
Aed10g0391 515 Pfam PPR repeat family 334 382 IPR002885 -
Aed10g0391 515 Pfam PPR repeat family 235 280 IPR002885 -
Aed10g0391 515 Pfam PPR repeat family 107 137 IPR002885 -
Aed10g0391 515 Pfam PPR repeat 174 204 IPR002885 -
Aed10g0391 515 Pfam PPR repeat 409 433 IPR002885 -
Aed10g0391 515 Pfam PPR repeat 141 165 IPR002885 -
Aed10g0391 515 Pfam PPR repeat 206 234 IPR002885 -
Aed10g0391 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 138 IPR002885 -
Aed10g0391 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Aed10g0391 515 PANTHER OS01G0913400 PROTEIN-RELATED 11 513 - -
Aed10g0391 515 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0391 Aed-Chr10 3183772 3185319 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0391 19 514 Glycoside Hydrolase AT3G49170 26.346 3.30e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0391 - - gmx:100802813 951.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0391 10 3183772 3185319 Aed10g0391 10 3183772 3185319 ECH