Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0375 ATGGCTGTGAGTGCAGCTTCAATTCTGACTCAGCTCCTCGGCAAGCAAAACCTGAAACCGAAGCTGAAACCACGGCCACACTCTCATTCTCAAACCCAACCCGGAAGTGACACCGACGCAGCGATCAAAACAATCGTGACATACCTAAAAGCGGGTTGCATCCGAAAAGCCACTTCCATTCTCTCCTCCTTCCCAAAACCCTTCCCTTTCCCTCTCTACGCCCTCTTCTTCCGCCTCTGCTCCTCCCACCGCGCCGACGTCGTGGAGGCCCGCAAGGTCGAGTCCCACTTGCTCACCTTCTCCCCCAACCCCCCCACCTTCCTCCTCAACCGCGCCATCGAAACCTACGCCAAATGCCACTGCCTCCGCGACGCTCGCGAACTGTTCGACGAAATGCGCCAACCAGATGGCGGCTCCTGGAACGCCCTCATCACCGCTTACTCCCAGTTGGGGTTCCCCAGCCAGACCTTTTCCTTGTTCCTGTGCATGACTAGGTCTGGTTTTTTACCTACTGGGGTCACTTTTGCTAGCGTTCTCGCCTCTTGTGCTGCTGCTTCTGATCTTCTTCTTTCCAAGCAGGTTCATGGGTTGGTCACAAAGTTTGGCTTTTGTGGCAACGTCATCCTCGGGAGTTCCCTTGTTGATGTTTATGGAAAGTGTGGGGTTATGGCTGATGCTCGCAGGATGTTTTATGAGATTCCGCAGCCTAATGCTGTCACTTGGAATGTGATTGTGAGGCGGTATCTTGATGCTGGTGATGCGAAGGAGGCGGTTTTCATGTTCTCGCAGATGTTTTCCACCGCCGAAGTTAGGCCGATGAATTTTACTTTCTCTAATGCTCTTGTTGCTTGTTCCAGCGTGTCTGCGCTCAAGGAGGGGATGCAGATTCATGGGGTGGTTGTGAAGTTGGGTCTCCATGAGGATAATGTTGTTTCGAGCTCGTTTGTGAACATGTATGTCAAGTGTGGTAGGCTGGAGGATGGTTTTCGGGTTTTTGATCAGCTTGGGTTCAGAGATCTGGTGTGTTGGACTTCCATTGTGTCGGGGTATGTGATGAGTGGGAAAACTTTGGAGGCAAGAAAGCTTTTCAATGAGATGCCTGAACGGAATGTGATCTCGTGGAATGCAATGTTGACGGGATATGTTTGGTGCTTTGAATGGTCTGAGGCATTAGATTTTGTGTATCTCATGCTTCATAAGATTAAAGATGTGGATCATGTCACTCTTGGCTTGATGTTAAATGTTTCAGCGGGTATTTCGGATCATGAAATGGGGAAACAGGTTCATGGATATATCTATAGACATGGCTTCCACTCGGACATTAGGATCAGCAATGCCCTTCTTGACATGTATGGGAAATGTGGGAACTTGAACAGTGTCAGGATTTGGTTTAACCAGATGAGTAATTGGCGTGACAGGGTTTCCTGGAATGCTTTGTTGACTAGCTATGGTCATCATCAATTAAGTGAACAGGCGTTAACAATGTTTTCAGAGATGCAGTGGGAGACAAAACCAACCAAGTATACATTTGGAACCCTTTTGTTAGCATGTGCAAATACCTTTGCTCTTTGTCTTGGCAAACAAATGCATGGATTCATCATTAGGCATGGATTTCAGATAGATACTATAACCAGAACTGCTTTGGTTTACATGTACTGTAAATGCCGTTGTCTTGAGTATGCTATTGAGGTTCTGAAGGGGGCAGTTACCAGGGATGTGATCATTTGGAATACCATAATTATGGGATGTTGTCACAATCATAAGGGTAAAGAAGCGCTGGAACTTTTTGTGATGATGGAAGCCGAAGGCATCAAGCCAGACCATGTGACCTTTAAGGGTATACTGCTTGCTTGCATTGAAGAAGGCATTGTTGAGCTTGGCACCGAATGCTTTAAGTCAATGAGCAGTGAATACCATGTCCTGCCCCGGCTGGAGCATTATGACTGTATGATTGAACTCTACAGTCAGAATGGATGCATGGATGAGCTCGAGACTTTTATGAGAACAATGACAATTGAGCCCACACTTCCCATGTTGAAAAGAGTTCTTGATGTTTGTCAGAAAAATGAGTGCCCAAGATTGGGAGAATGGATTGCAGAAAAAATTAATGAATTCAAACATTAA 2124 0.468 MAVSAASILTQLLGKQNLKPKLKPRPHSHSQTQPGSDTDAAIKTIVTYLKAGCIRKATSILSSFPKPFPFPLYALFFRLCSSHRADVVEARKVESHLLTFSPNPPTFLLNRAIETYAKCHCLRDARELFDEMRQPDGGSWNALITAYSQLGFPSQTFSLFLCMTRSGFLPTGVTFASVLASCAAASDLLLSKQVHGLVTKFGFCGNVILGSSLVDVYGKCGVMADARRMFYEIPQPNAVTWNVIVRRYLDAGDAKEAVFMFSQMFSTAEVRPMNFTFSNALVACSSVSALKEGMQIHGVVVKLGLHEDNVVSSSFVNMYVKCGRLEDGFRVFDQLGFRDLVCWTSIVSGYVMSGKTLEARKLFNEMPERNVISWNAMLTGYVWCFEWSEALDFVYLMLHKIKDVDHVTLGLMLNVSAGISDHEMGKQVHGYIYRHGFHSDIRISNALLDMYGKCGNLNSVRIWFNQMSNWRDRVSWNALLTSYGHHQLSEQALTMFSEMQWETKPTKYTFGTLLLACANTFALCLGKQMHGFIIRHGFQIDTITRTALVYMYCKCRCLEYAIEVLKGAVTRDVIIWNTIIMGCCHNHKGKEALELFVMMEAEGIKPDHVTFKGILLACIEEGIVELGTECFKSMSSEYHVLPRLEHYDCMIELYSQNGCMDELETFMRTMTIEPTLPMLKRVLDVCQKNECPRLGEWIAEKINEFKH 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0375 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Aed10g0375 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 572 606 IPR002885 -
Aed10g0375 707 Gene3D Tetratricopeptide repeat domain 41 193 IPR011990 GO:0005515
Aed10g0375 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 267 IPR002885 -
Aed10g0375 707 Gene3D Tetratricopeptide repeat domain 421 523 IPR011990 GO:0005515
Aed10g0375 707 Gene3D Tetratricopeptide repeat domain 524 621 IPR011990 GO:0005515
Aed10g0375 707 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 490 579 - -
Aed10g0375 707 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 581 705 - -
Aed10g0375 707 TIGRFAM PPR: pentatricopeptide repeat domain 474 500 IPR002885 -
Aed10g0375 707 TIGRFAM PPR: pentatricopeptide repeat domain 575 607 IPR002885 -
Aed10g0375 707 TIGRFAM PPR: pentatricopeptide repeat domain 341 371 IPR002885 -
Aed10g0375 707 Pfam PPR repeat family 472 518 IPR002885 -
Aed10g0375 707 Pfam PPR repeat family 571 618 IPR002885 -
Aed10g0375 707 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 581 705 - -
Aed10g0375 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 136 170 IPR002885 -
Aed10g0375 707 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 490 579 - -
Aed10g0375 707 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5 493 - -
Aed10g0375 707 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 493 - -
Aed10g0375 707 Gene3D Tetratricopeptide repeat domain 338 400 IPR011990 GO:0005515
Aed10g0375 707 Gene3D Tetratricopeptide repeat domain 194 337 IPR011990 GO:0005515
Aed10g0375 707 Gene3D Tetratricopeptide repeat domain 622 707 IPR011990 GO:0005515
Aed10g0375 707 Pfam PPR repeat 239 264 IPR002885 -
Aed10g0375 707 Pfam PPR repeat 646 670 IPR002885 -
Aed10g0375 707 Pfam PPR repeat 139 168 IPR002885 -
Aed10g0375 707 Pfam PPR repeat 372 398 IPR002885 -
Aed10g0375 707 Pfam PPR repeat 445 468 IPR002885 -
Aed10g0375 707 Pfam PPR repeat 113 133 IPR002885 -
Aed10g0375 707 Pfam PPR repeat 313 334 IPR002885 -
Aed10g0375 707 Pfam PPR repeat 341 371 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0375 Aed-Chr10 3031092 3033215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0375 30 705 Glycoside Hydrolase AT3G49170 27.365 2.01e-78 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0375 - - gmx:100775626 1253.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0375 10 3031092 3033215 Aed10g0375 10 3031092 3033215 ECH