Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0350 ATGGCCGCGCTCTCATATCAACCTTTCTTCGCCCTTCACAGAATCACTTCCACCGACGCCGACGCCAACGCCTTCTTCATTCGGCCTCGGCCTTCCGTTCCTCCCTGGCCTCGCCTGAGACGACGTCGTTGCGCACCCGTTCTCGTCGCCGTTGCGTCCGTTAAGGAAAATCTCGGTAGCGTTCAAAAGCGTTTCACCGACTTCACGAGCCTGAACTACTGGGTTATTCGCGACTACTACCGGCTCGTGAACTCCGTCAACGCCTTCGAGCCGCAGATTCAAGCGCTCTCCGATGAACAGCTGGCCGCGAAAACTGCCGGGTTTCGCCGCCGGCTCGCCCGGGGAACCACGCTCGCCGATATCCAAGCTGAGGCGTTCGCTGTTGTTCGTGAAGCTGCATGGAGAAAACTTGGAATGCGCCATTTCGATGTTCAGATTATTGGCGGAGCAGTGCTGCATGATGGTTCCATTGCTGAGATGAAAACGGGGGAGGGTAAAACCTTGGTTTCCACGCTAGCGGCTTATCTTAATGCCCTGACTTCTGAGGGTGTTCATGTGGTAACTGTCAATGATTATTTAGCTCAACGTGATGCTGAATGGATGGGACGTGTTCATCGTTTCTTAGGTCTATCCATTGGTCTTATTCAGAGAGGAATGAATTCCGAAGAACGGAGACTCAACTACAGATGCGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACCTGCGAGATAATCTTGCTGGAAATAGTGAACAGCTTGTAATGAGATGGCCAAAGCCCTTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATCAGTGGTGAGGCAAGTAAAGATGCCGCACGATTCCCTGTTGCTGCAAAAGTAGCTGAACTGCTTATACAGGGCATTCATTACAAAGTGGAGCTTAAAGATAATTCTGTGGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTAGAAACTAATGACCTTTGGGATGAAAATGATCCTTGGGCCAGATTTGTGATGAATGCTGTAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATGGTTAGAGATGGGAAGGCTTTGATTATCAATGAGCTGACAGGTAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTTGTGGCACAGATCACATACCAGTCATTATTCAAGCTCTATCCAAAGTTGTCAGGAATGACTGGGACTGCCAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCGGATGCCAGTCATTGAAGTGCCCACAAATCTTTCTAATATTCGAAAAGATTTGCCTATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGTCGTCCTGTCTTAGTTGGGACAACTAGTGTAGAAAATTCAGAACTTTTGTCTGGTCTGCTTAGGGAATGGAATATTCCTCATAATGTTCTGAATGCTAGACCCAAGTATGCTGCAAAAGAAGCTGAAACTGTTGCACAAGCAGGACGGAAAAATGCCATTACCCTCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCTTACTTTCATTTTTGACACGAGAGGATCCAAATGTTGAACTTGCAGATGAGGCTATTTCACAAAAGGTGCTTCCAAAGATAAAGGTTGGATCATCATCAATGGCCTTACTGGCTAAGACAGCCTTAATGGCTAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACATATCAGAAGGCTAAATCTTTTATCTTGGAGGCTGTTGAAATGAGCCAGTCATATAGTTTGGAGGAGCTGGAGAAGCTTGCTAATGAAGAATCTGAGATCTACCCTCTTGGTCCAACAGTAGCACTTGCTTATCTGTCAGTTTTGAAGGATTGTGAAGAACACTGTTTGCATGAAGGTTCTGAGGTAAAAAGGCTTGGGGGTCTTCATGTGATTGGTACATCCTTACATGAGTCCCGGAGAATAGATAACCAGGTGGCTTGTAATAATTTTTTATCTAGCTACGTGGCAGAGCAGGAAGACAGGGGGATCCGGGATCAACAAGATTTATGGTCAGGGCTGTCAGCCAGTTCTCACACTATCGCGTCATGTTATAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGATACTGAATGGGCAGTGAGACTTATCTCAAAGATTACAAATGACGAGGATCTGCCAATTGAGGGTGATGCCATTGTAAAGCAGCTTTTGGCACTGCAAATCAATGCAGAAAAGTTCTTCTTTGGCATAAGAAAGAACCTTGTTGAGTTTGATGAAGTATTGGAGGTGCAACGAAAGCATGTTTATGATCTAAGGCAATTAATCTTAACTGGAGATGATGAAAGCTGTTCCCAACACATATTCCAGTACATGCAAGCAGTGGTGGACGAGATTGTCTTCAGTAATATTGATCCACTGAAGCATCCACGTAGCTGGGGTTTGAGTAAGCTCTTGAAAGAGTTTATGACTGTTGGTGGAAAGCTGTTGCATGGTAGGCTTGTTTGCTACGGCTATGAATCTTTCCGAGGAACTAGTGATGACACTTTGCTAAACTCACTTGGGCTACTGAATGATGTGGGTTCAGTTGATATTGTCAACCTTTCCCTTCCAAATTTGCCAGAACCTCCAAATGCCTTCAGGGGAATTCGTAGGAAGAGTTCTTCATTAAGACGATGGCTTGCTATTTGCACTGATGATTTGATTGGGAATGGGAAGTACCAAACAACTTCTAATCTTCTGCGCAAGTATCTTGGAGATTTTCTAATTGCTTCATATTTAAATGTTGTTGAAGATTCTGGTTATGATGACAGACATGTGAAGGAAATTGAGAGAGCTGTTCTTTTGCAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGCTCTGCGGTAGTGAACATTAGGAGCTTTGGCCATAGAAATCCTCTTGAAGAGTATAAAATTGATGGTTGTCGATTTTTTATCTCAATGCTCAGTGCAACTCGAAGGTTAACTGTAGAAGCACTCCTGCGGTATTGGACATCTCCAATGGAATCCCAAGAACTATTTTTATCATAA 3249 0.4374 MAALSYQPFFALHRITSTDADANAFFIRPRPSVPPWPRLRRRRCAPVLVAVASVKENLGSVQKRFTDFTSLNYWVIRDYYRLVNSVNAFEPQIQALSDEQLAAKTAGFRRRLARGTTLADIQAEAFAVVREAAWRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSIGLIQRGMNSEERRLNYRCDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLIQGIHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNAVKAKEFYRRDVQYMVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFRMPVIEVPTNLSNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGTTSVENSELLSGLLREWNIPHNVLNARPKYAAKEAETVAQAGRKNAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTREDPNVELADEAISQKVLPKIKVGSSSMALLAKTALMAKYVSKSEGKSWTYQKAKSFILEAVEMSQSYSLEELEKLANEESEIYPLGPTVALAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQVACNNFLSSYVAEQEDRGIRDQQDLWSGLSASSHTIASCYSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEIVFSNIDPLKHPRSWGLSKLLKEFMTVGGKLLHGRLVCYGYESFRGTSDDTLLNSLGLLNDVGSVDIVNLSLPNLPEPPNAFRGIRRKSSSLRRWLAICTDDLIGNGKYQTTSNLLRKYLGDFLIASYLNVVEDSGYDDRHVKEIERAVLLQTLDCFWRDHLVNMNRLSSAVVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRYWTSPMESQELFLS 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0350 1082 ProSiteProfiles SecA family profile. 61 787 IPR014018 -
Aed10g0350 1082 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 56 1080 - -
Aed10g0350 1082 SMART SecA_PP_bind_2 289 400 IPR011130 GO:0016020|GO:0017038
Aed10g0350 1082 Gene3D - 80 457 IPR027417 -
Aed10g0350 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 715 IPR027417 -
Aed10g0350 1082 SUPERFAMILY Helical scaffold and wing domains of SecA 791 1079 IPR036266 -
Aed10g0350 1082 TIGRFAM secA: preprotein translocase, SecA subunit 86 879 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aed10g0350 1082 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 56 1080 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aed10g0350 1082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 457 IPR027417 -
Aed10g0350 1082 Pfam SecA preprotein cross-linking domain 300 400 IPR011130 GO:0016020|GO:0017038
Aed10g0350 1082 Gene3D Helical scaffold and wing domains of SecA 757 1070 - -
Aed10g0350 1082 SUPERFAMILY Pre-protein crosslinking domain of SecA 288 409 IPR036670 GO:0016020|GO:0017038
Aed10g0350 1082 PRINTS SecA protein signature 455 468 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aed10g0350 1082 PRINTS SecA protein signature 228 248 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aed10g0350 1082 PRINTS SecA protein signature 175 185 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aed10g0350 1082 PRINTS SecA protein signature 159 173 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aed10g0350 1082 PRINTS SecA protein signature 418 435 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aed10g0350 1082 PRINTS SecA protein signature 121 145 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aed10g0350 1082 PRINTS SecA protein signature 381 403 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aed10g0350 1082 CDD DEXDc_SecA 100 456 - -
Aed10g0350 1082 SMART SecA_DEAD_2 65 444 IPR011115 GO:0005524|GO:0016020|GO:0017038
Aed10g0350 1082 Hamap Protein translocase subunit SecA [secA]. 53 1072 IPR000185 GO:0005524|GO:0006605|GO:0006886
Aed10g0350 1082 Pfam SecA Wing and Scaffold domain 785 1069 IPR011116 GO:0016020|GO:0017038
Aed10g0350 1082 Gene3D - 460 718 IPR027417 -
Aed10g0350 1082 Gene3D - 290 410 - -
Aed10g0350 1082 Pfam SecA DEAD-like domain 75 443 IPR011115 GO:0005524|GO:0016020|GO:0017038
Aed10g0350 1082 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 310 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0350 Aed-Chr10 2808529 2824413 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0350 K03070 - gmx:100793437 1824.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0350 10 2808529 2824413 Aed10g0350 10 2808529 2824413 ECH