Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0349 ATGGAGCTGCCGGAGTGCCCGGTGTGTCTTCAAAACTTCGAGGAGCGCGAAGCAATTCCTCGTGTTTTACCATGTGGACACTCCGTCTGCGAAGCTTGCCTCTCGGAGCTTCCGCTGCGGTACCCGGACACTATTCGGTGTCCCGCGTGCACCCAACTCGTGAAGTACCCTTCACAACAAGGTCCTTCCTCTCTTCCCAAAAACATCGACCTCCTCAGACTCTCCCTTCAACAATCCCTTTCCTCTTCTTCTTCTTCTTCTTCTAATCATTCCCCAAAACCAAATCAACGGTCCACAATCAATTCCGGTTACGATCATACTCCGTTCTGGTCCCCCGAGTTCTACGCTACATGGAAGGATTGGATTCTCCCGCACGACGCCGTTTTAACGGACGATCAGTGTCTTGGCCGGTTCAGTTCGTCCAAGGGTAGGGTTTGCTTCGGGGTTAACCGTAGTGTGAGTCTTGCTCCTATTGTTTGTTTCCCTCCTCGGGATCGTTCCAAGTTTAGGTTTAGCTATGTTGCATGGGTGATTAAGTGTTTGGAGGAGTTGAACGAGGGTGCGAGGGAAGAGTTAGCGTTGATTCTCGAAGCTTCCGTGAGGCAGGGGAGGGTGTGTAGGGTTTATGGGTTGTGGAGTGATGGGGTGGAGGGGCCTCTGTATATAGTGTGCGAGAGGCAAAGTGGTAATATTTTGGAAAAGTTTGATGGATTGGGAAATGGCTTTGTTGGTGTGAATCAGGGTGGTTTGGAGTTGGATAAAGATGGGATTTTTAGTTTTTTAATGATTGGGAAGAGTATATGTGAAGCTGTGCTTGCTTTGCATTTGGAAGGGTTGATCGCTGGCTGTTTGGGGCTTTCTTCTTTCTCTTTTGATGAGCTTGGTGGGATTTGTGTTGATTTGAATGAGGCCTTGATGATGGGAAGGAAGATTGTGAATGCTGTTTCTGGTAAACACGAAGAAGAAGCAGTGTGTAAGGATTGCTTGGAAAATGAGATTTTTGTAAGCCCTGAGGTTTTGTGTGAGTTGTCGCACAAGAGGGGCAGTGCTTCCGATGGTGAGCATTCGAGATATCCAATTGGGTATGGCTCAGATGTATGGTCATTGGCTTGTGTACTGCTGCAGCTTCTTGTTGGAAATGCGCTGCCTCAGAATACCTTGGAAATGAAGGAAGAGAATGACAGTGATATCTCAGCTAGTTATGTGTGTTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGACAAACTAGGCTCTGAATATCTGTCACTAAGGCAGATTCTTTGTAAATGTTTGGATGTCAATCCAGGAAACCGTCCAGATGTGGTGGATGTAAGGAAATGCATTCAGGATATGTTAGTCAAACCTCAATCTGATTTTCTGGGCAACTTGGAGATCATGATAAGTAGGGACAGCACAGGTCATTGCTTGGTTCAAGGGGAGTTGTGTTTGTTGCCTAAGCAAAGTTCTAATGAACCGATTGAACATGAGTTGCAGGAGAAAGAAATTGGCGGTCAATCAAAATTTGTTGAAGATGGCAAAGACAAATCTGATGAAGACTTTGCTGCTGGCTTACCCAAGGGAATGACTGAACTCAAAGATCTGCGGGGCCATCTTGATTGTATCAGTGGATTGGCTGTTGGGGGGGGGTATCTATTGAGCTCCTCATTTGATAAAACTGTTCATGTATGGTCCTTGCAGGACTTTTCTCATTTACACACATTTAGAAGCCACGAGAATAAAGTCATGGCTCTAGTTTATGTAGATGAAGAAGAACCATTGTGCGTAAGTGGCGACAGTGGAGGGGGCATATTTGTCTGGGGAATTGCTGCACCTCTTAGGCAAGATCCCTTAAAGAAATGGTATGAGAAGAAGGATTGGCGTTTTAGTGGTATCCACTCCTTGGCTGTTTCCAAAAATCATTCTCTCTACACTGGAAGCGGAGATAGAACAATAAAAGCCTGGTCATTAAAGGATGAAACTTTGATATGCACAATGACTGGCCATAGATCTGTAGTTTCCACACTTGCTGTATGTGATGAAGTTCTTTACAGTGGTAGTTGGGATGGTACAGTTCGGTTGTGGAGTCTTAATGACCACAGTCCATTGACAGTTTTGGGGGAAGATACGCCAGCAGAGATGAAGTCTATCTTGGCTATTACTGTAGATAGGCATTTGCTTGTTGCGGCACATGAGAATGGATGCATAAAGGTCTGGAGAAACGATGTGTTCATGAATTCTAAAACATTGCACAATGGGACCATTTCTGCTATGAGTATGCAGGGAAAATGCCTTTATACAGGAGGTTGGGACAAAAATGTTAATCTACAGGAATTATCTGGAGATGAGTTTGAACTGGATGTCAAAGCATATGGATCCATTCATTGCAGTGCTGTTGCAACAGCTATATTATGCAGCCAAGGTAAACTATACGTTGGATATGCTGACAAGTCAATCAAGTCTACTTAA 2466 0.4481 MELPECPVCLQNFEEREAIPRVLPCGHSVCEACLSELPLRYPDTIRCPACTQLVKYPSQQGPSSLPKNIDLLRLSLQQSLSSSSSSSSNHSPKPNQRSTINSGYDHTPFWSPEFYATWKDWILPHDAVLTDDQCLGRFSSSKGRVCFGVNRSVSLAPIVCFPPRDRSKFRFSYVAWVIKCLEELNEGAREELALILEASVRQGRVCRVYGLWSDGVEGPLYIVCERQSGNILEKFDGLGNGFVGVNQGGLELDKDGIFSFLMIGKSICEAVLALHLEGLIAGCLGLSSFSFDELGGICVDLNEALMMGRKIVNAVSGKHEEEAVCKDCLENEIFVSPEVLCELSHKRGSASDGEHSRYPIGYGSDVWSLACVLLQLLVGNALPQNTLEMKEENDSDISASYVCWVEKVSSVLEDKLGSEYLSLRQILCKCLDVNPGNRPDVVDVRKCIQDMLVKPQSDFLGNLEIMISRDSTGHCLVQGELCLLPKQSSNEPIEHELQEKEIGGQSKFVEDGKDKSDEDFAAGLPKGMTELKDLRGHLDCISGLAVGGGYLLSSSFDKTVHVWSLQDFSHLHTFRSHENKVMALVYVDEEEPLCVSGDSGGGIFVWGIAAPLRQDPLKKWYEKKDWRFSGIHSLAVSKNHSLYTGSGDRTIKAWSLKDETLICTMTGHRSVVSTLAVCDEVLYSGSWDGTVRLWSLNDHSPLTVLGEDTPAEMKSILAITVDRHLLVAAHENGCIKVWRNDVFMNSKTLHNGTISAMSMQGKCLYTGGWDKNVNLQELSGDEFELDVKAYGSIHCSAVATAILCSQGKLYVGYADKSIKST 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0349 821 Gene3D - 509 609 IPR015943 GO:0005515
Aed10g0349 821 SUPERFAMILY Protein kinase-like (PK-like) 201 454 IPR011009 -
Aed10g0349 821 SMART ring_2 6 50 IPR001841 -
Aed10g0349 821 Coils Coil 178 198 - -
Aed10g0349 821 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Aed10g0349 821 PANTHER - 2 819 IPR044715 -
Aed10g0349 821 SUPERFAMILY WD40 repeat-like 528 819 IPR036322 GO:0005515
Aed10g0349 821 SMART serkin_6 129 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0349 821 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Aed10g0349 821 Pfam WD domain, G-beta repeat 530 564 IPR001680 GO:0005515
Aed10g0349 821 Pfam WD domain, G-beta repeat 662 695 IPR001680 GO:0005515
Aed10g0349 821 PRINTS G protein beta WD-40 repeat signature 551 565 IPR020472 -
Aed10g0349 821 PRINTS G protein beta WD-40 repeat signature 682 696 IPR020472 -
Aed10g0349 821 PRINTS G protein beta WD-40 repeat signature 642 656 IPR020472 -
Aed10g0349 821 Pfam RING-type zinc-finger 6 48 IPR027370 -
Aed10g0349 821 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 704 IPR001680 GO:0005515
Aed10g0349 821 Gene3D - 610 820 IPR015943 GO:0005515
Aed10g0349 821 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 665 697 - -
Aed10g0349 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Aed10g0349 821 SUPERFAMILY RING/U-box 5 59 - -
Aed10g0349 821 ProSiteProfiles Protein kinase domain profile. 136 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed10g0349 821 ProSiteProfiles Trp-Asp (WD) repeats profile. 534 573 IPR001680 GO:0005515
Aed10g0349 821 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 2 819 - -
Aed10g0349 821 MobiDBLite consensus disorder prediction 81 102 - -
Aed10g0349 821 Gene3D Transferase(Phosphotransferase) domain 1 188 453 - -
Aed10g0349 821 CDD RING-HC_TRIM32_C-VII 5 51 - -
Aed10g0349 821 SMART WD40_4 567 607 IPR001680 GO:0005515
Aed10g0349 821 SMART WD40_4 658 695 IPR001680 GO:0005515
Aed10g0349 821 SMART WD40_4 527 564 IPR001680 GO:0005515
Aed10g0349 821 SMART WD40_4 613 655 IPR001680 GO:0005515
Aed10g0349 821 SMART WD40_4 740 777 IPR001680 GO:0005515
Aed10g0349 821 SMART WD40_4 698 739 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0349 Aed-Chr10 2801852 2806819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0349 526 746 Acyl Lipid Metabolism Gene Families AT3G18860 28.692 2.76e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0349 - K03070 gmx:100793437 1457.58