Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0347 ATGGTTGCTCTCAATTCAAGGACCTCCAATGTCATCATAAGTAGTATGATTTCATGTGAACCGGATGCTGACACTTATACAATGATGATTAAAATGTTTTGTGAGAAAAATGAACTGGAGATGGCTCTGAAAGTATGGAAGTATATGAAGTCGAAAAAGTTTGTTCCAAGCATGCACACCTTTTCTGCCCTTATCAAGGGGTTGTGTGAAAAGGGTATTGGTGCAAAAGCTTGTGTTGTGATGGAAGAGATGATAGAGAAGGGAATTCAACCATCACATGTTACATTTGGGAGGTTAAGACAATTGCTTATAAAGGAAGGAAGAGAGGATGTGCTCAAATTTCTTTACGAGAAAATGAATCTTCTTGTCAAGGAGCCTTTATGTGATTAA 390 0.3769 MVALNSRTSNVIISSMISCEPDADTYTMMIKMFCEKNELEMALKVWKYMKSKKFVPSMHTFSALIKGLCEKGIGAKACVVMEEMIEKGIQPSHVTFGRLRQLLIKEGREDVLKFLYEKMNLLVKEPLCD 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0347 129 Pfam PPR repeat family 21 69 IPR002885 -
Aed10g0347 129 Gene3D Tetratricopeptide repeat domain 2 127 IPR011990 GO:0005515
Aed10g0347 129 PANTHER OS03G0761300 PROTEIN 10 126 - -
Aed10g0347 129 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 57 91 IPR002885 -
Aed10g0347 129 TIGRFAM PPR: pentatricopeptide repeat domain 25 57 IPR002885 -
Aed10g0347 129 TIGRFAM PPR: pentatricopeptide repeat domain 59 92 IPR002885 -
Aed10g0347 129 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Aed10g0347 129 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 126 - -
Aed10g0347 129 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0347 Aed-Chr10 2797018 2797447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0347 9 96 Miscellaneous Gene Families AT4G11690 35.556 1.10e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0347 - - gmx:100790096 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0347 10 2797018 2797447 Aed10g0347 10 2797018 2797447 ECH