Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0335 ATGCCAGCTTCTCCTTCAGGTATTCATTCATTCATTCCTCTCCAAAACCCTCACTCCCTCTTTCCAATTCCCGCAATTTCTCGTCCCTCAATTCCTCTTTTCGTTTTGTTTTTGGCAGATAACCGAACCAAATGGAGGAAGCGCAAGAGAGATTCGCAAATCAGCCGGCGCCATCCCAAGCACGAGGAGGAGGAGGAGGACGACGACGAAAACCCCAATGCGGACGAAGACCACGCCGAACGCGACTACGATTCCGAGGAACAATCGCACCCTAATTCCCAACCTCACTTCGAAACCGAGGTTCTCTCCGACCATGCCGTTCAGATTTCACACTTCCCGGCGGTGATTAAGCGCTCTGTCAATCACCCTCACTCCTCCGTCACTGCAATTGTTGCTTTGGAACGTGCCCTCGAGTCTGGAGACAGCAAGGCTCAAAGCTCTCTCGCTGCTCCGATTCTCGAGAACATATCTCACGGCCAGCTTCAAGCGCTTTCATCTGTTCCCTCTGATCACTTCTCTTTCGACGGTGATTCCTCTTTTGTCATCACTCCCCCTCCCATTTTGGAAGGCCGTGGCGTTGTTAAGCGCTTTGGACCCAAGGCTCTTGTAGTTCCAATGCATTCAGATTGGTTTTCGCCTGCCACCGTGCACAGGTTGGAGAGGCAAGTGGTGCCGCATTTCTTTTCTGGGAAATCGCCCGATCATACTCCGGAGAAGTACATGGAGTGTAGGAACTGCATTGTTGCTTTGCACATGGAGGATCCCGGGAAGAAGATTACGGTTTCTGATTGCCAGGGTTTGTTGTCTGGGTTTGATGTTGAAGATTTGACTCGGATTGTCAGGTTCCTTGATCATTGGGGAATTATCAATTACTGCATTCGGATGCCCAGTCATGAGTCTCCCAATGCTGTGTCTTGCCTGAGGGAGGATCCCAGTGGAGAGGTCCGTGTCCCGTCCGAGGCTTTGAAATCTATAGACAGTTTGATCAAATTTGACAAGTCCAAGTGTAAGCTGAACGCAGATGAATTTTATTTGTCATTGACTGCACATAATGCTGATGTCCTTGATCTCGAGGACAGAATAAGAGAGCATCTATCAGAGAATCATTGCAATTATTGTTCTCGTTCTCTTCCTGTTGTATACTATCAGTCTCAAAAAGAGGTTGATACTTTACTCTGCTCTGATTGCTTTCATGATGGGAGATTTGTCATTGGTCATTCAAGTATAGATTTTTTAAGGGTGGATTCAACAAGGGATTATGGTGAACTAGATGGGGATAGTTGGACTGATCAAGAAACTTTGATGCTTCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATCGCGGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCCATGGAAGATGGAAAATTGGAAAATATTAATGTTCCAAGCATGCCTTGGTCATCCAATGCAATGAATAGAGATGGTAGTGGAAAACTGCATTGTTACTCAAATGGAGATACTGCAGGACCTGTCCATCAAACCAGAGATTCTGACAGCCGGCTTCCTTTTGCAAATTCTGAAAATCCTGTTATGGCTTTGGTTGCCTTTTTAGCCTCTGCAGTTGGACCTAGAGTAGCTGCTTCTTGTGCTCATGCAGCATTAGCAGTATTGTCAGGGGATAATTCTGGTAGCACATCAGAGATGGAAGCACCAGGACATGATAATAGGACAAATTCAGAAAGCATACATTGCCGAGATGGTGGCCCTCATGGAGAAACAGAAGTTTCAAATAATCATAATGAGGATAAGGCAAAGGTTCATGGTTCATGGGGGGGTCTAAATGAGGGTAGGACAACCCCACTCTCAGCTGAGAAAGTTAAAGATGCGGCTAAAGCAGGCCTTTCTGCTGCAGCAATGAAAGCAAAATTATTTTCCGATCATGAAGAACGAGAAATTCAGAGGTTATGTGCCAATATAGTTAATCATCAGCTGAAAAGATTGGAATTGAAGCTGAAACAGTTTGCAGAAATTGAAACGTTGTTAATGAAAGAATGCGAACAACTGGAGAGAACAAAGCAAAGGTATGCTGCGGAACGGTCCCGTGTAATATCAACACGTCTTGGAACTGCGGGAGCCACACCCACAATGAATGCATCGGGGGTTGGTCCTTCAATGGCTAGTAATGGCAACAATAGGCAACAAATGATCTCTCCTTCTCCCTCACAACCCAGCATCTCAGGGTATGGCAACAACCAACCAGTTCATCCACATATGTCCTTTGCCCCACGACCTTCAACGTTTGGATTGGGGCAAAGATTGCCCCTTTCTATGATACAACAATCACAATCAGCTTCTTCAACTGCTATGTTCAATGCCCCTAGTAATGTGCAGCCCACTACCAATCATCCATTGTTGAGGCCTGTATCGGGAACTAACTCTGGTTTAGGTTAA 2451 0.4565 MPASPSGIHSFIPLQNPHSLFPIPAISRPSIPLFVLFLADNRTKWRKRKRDSQISRRHPKHEEEEEDDDENPNADEDHAERDYDSEEQSHPNSQPHFETEVLSDHAVQISHFPAVIKRSVNHPHSSVTAIVALERALESGDSKAQSSLAAPILENISHGQLQALSSVPSDHFSFDGDSSFVITPPPILEGRGVVKRFGPKALVVPMHSDWFSPATVHRLERQVVPHFFSGKSPDHTPEKYMECRNCIVALHMEDPGKKITVSDCQGLLSGFDVEDLTRIVRFLDHWGIINYCIRMPSHESPNAVSCLREDPSGEVRVPSEALKSIDSLIKFDKSKCKLNADEFYLSLTAHNADVLDLEDRIREHLSENHCNYCSRSLPVVYYQSQKEVDTLLCSDCFHDGRFVIGHSSIDFLRVDSTRDYGELDGDSWTDQETLMLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSMPWSSNAMNRDGSGKLHCYSNGDTAGPVHQTRDSDSRLPFANSENPVMALVAFLASAVGPRVAASCAHAALAVLSGDNSGSTSEMEAPGHDNRTNSESIHCRDGGPHGETEVSNNHNEDKAKVHGSWGGLNEGRTTPLSAEKVKDAAKAGLSAAAMKAKLFSDHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQLERTKQRYAAERSRVISTRLGTAGATPTMNASGVGPSMASNGNNRQQMISPSPSQPSISGYGNNQPVHPHMSFAPRPSTFGLGQRLPLSMIQQSQSASSTAMFNAPSNVQPTTNHPLLRPVSGTNSGLG 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0335 816 ProSiteProfiles Myb-like domain profile. 420 470 IPR001005 -
Aed10g0335 816 PANTHER SWI/SNF COMPLEX-RELATED 90 815 - -
Aed10g0335 816 Pfam SWIRM domain 205 291 IPR007526 GO:0005515
Aed10g0335 816 MobiDBLite consensus disorder prediction 560 618 - -
Aed10g0335 816 ProSiteProfiles SANT domain profile. 423 474 IPR017884 -
Aed10g0335 816 MobiDBLite consensus disorder prediction 710 747 - -
Aed10g0335 816 ProSiteProfiles Zinc finger ZZ-type profile. 365 419 IPR000433 GO:0008270
Aed10g0335 816 Gene3D - 424 474 - -
Aed10g0335 816 Gene3D - 208 294 IPR036388 -
Aed10g0335 816 SUPERFAMILY Homeodomain-like 425 478 IPR009057 -
Aed10g0335 816 CDD SANT 427 469 IPR001005 -
Aed10g0335 816 MobiDBLite consensus disorder prediction 76 93 - -
Aed10g0335 816 SMART sant 424 472 IPR001005 -
Aed10g0335 816 MobiDBLite consensus disorder prediction 778 816 - -
Aed10g0335 816 ProSiteProfiles SWIRM domain profile. 202 300 IPR007526 GO:0005515
Aed10g0335 816 SUPERFAMILY Homeodomain-like 201 294 IPR009057 -
Aed10g0335 816 Pfam SWIRM-associated region 1 632 709 IPR032451 -
Aed10g0335 816 MobiDBLite consensus disorder prediction 47 96 - -
Aed10g0335 816 MobiDBLite consensus disorder prediction 573 608 - -
Aed10g0335 816 Pfam Myb-like DNA-binding domain 427 469 IPR001005 -
Aed10g0335 816 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 90 815 - -
Aed10g0335 816 Coils Coil 678 698 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0335 Aed-Chr10 2704779 2717135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0335 370 466 EF-hand Containing Proteins AT3G07740 33.019 2.13e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0335 K11649 - gmx:100780440 1383.24