Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0270 ATGATCTCTGTCTATGCCAAGTGTTCCCATTTCGACGATGCACGAACCCTTTTCGACGAAATGCCTCAAAGGAACATAGTTTCTTACACAACAATGGTCTCTGCATTCACCAATTCTGGGAGACCCCACGAGGCTCTTACACTCTACAACCACATGCTGGAACCCAAAACAGTGCAACCCAATCAGTACTTGTACTCTGCGGTTCTCAAGGCATGTGGCCTCGTGGGTGATGTTGAATTGGGCAAGTTGGTTCACCAGCATGTATCTCAAGCTAGGTTAGAGTTTGACACTGTTCTGATGAATGCCCTGTTGGACATGTACGTCAAATGTGGGAGCTTGAGGAATGCAAAACGAGTTTTCCATGAAATTCCGTGTAAAAATTCCACTTCATGGAACACCCTCATTCTTGGACATGCTAAACAGGGTTTAATGAGGGATGCGTTGAATCTGTTTGATCAAATACCGGAACCAGACCTTGCGTCTTGGAATAGCATCATTGCTGGTCTTGCAGATAATGCTAGCCCTCATGCCTTGCAATTTGTTTCTACTATGCACGGGAAGGGCCTTAAACTTGATGCGTTCACATTTCCATGTGCCCTCAAAACATGTAGTCTTTTTGGCGAGTTAACCATGGGGAGACAGATTCATTGTTGTATTATAAAGTCAGGGTTTGAGTGTAGCTGTTATTGTATATCAGCATTGATTGACATGTATTCGAATTGCAAGCTATTGGATGAAGCAATGAAGATATTTGATAAGAACTATCCTCTTGGTGAAAGCTTGGCATTATGGAATTCCATGCTTTCTGGGTATGTTGCCAATGGAGATTGGTGGAAGGCTCTCAGTATGATTACTCGTATGCATCATTCTGGTGCACAGTTTGATTCATATACCTTTAGTATTGCTTTAAAGGTATGCATCTATTTTGATAATTTGAGGTTGGCATCTCAAGTGCATGGATTGGTCATCACTAGTGGCTATGAGTTAGATTATGTTGTTGGAAGCATTCTTATTGATATATATGTGAAACAGGGAAATATTAACGATGCATTAAGATTGTTTGGAAGGTTGCCAGATAAAGATGTTGTGGCTTGGTCTAGTTTGATTGTTGGGTGTGCTAGATTTGGTTTAGGTACATTAGCTTTTTCCCTCTTTATGGATATGGTTCATTTGGATCTTGAGATTGATCATTTTGTCCTTTCAATTGTTCTGAAAGTTTCTTCAAGTTTGGCATCTCTTCAAAGTGGCAAGCAAATCCATTCTTCCTGTCTTAAAAAGGGATATGAATCAGAGAGAGTTATTACCACTGCTCTTACTGATATGTATGCAAAATGTGGTCAGATTGAGGAGGCCTTAGCTTTGTTTCACTGTCTTTTGGATATAGATACCATGAGTTGGACCGGGATTATTGTTGGATGTGCACAAAATGGAAGAGCAGACAAGGCAATTAGTCTTCTGCATGAGATGATAGAATCAGGTACAAAGCCAAACGAAATCACCATTCTAGGTGTTCTTACTGCATGTAGACATGCAGGCCTAGTTGAAGAGGCATGGACCATATTTAAGTCTATTGAAACAGAGCATGGATTGAGACCATGCCCAGAACATTACAATTGTATGGTTGATATATTTGCTCAAGCAGGACGTTTTAAAGAAGCAACAAACTTTATTAATGAGATGCCATTCAAGCCTGACAAAACCATATGGTGCTCCTTGCTTGGTGCCTGTGGAACTTACAAGAATCGACATCTTGCAAATATTGTTGCTGAGCATCTTCTTGCTACCTCACCAGAAGATGCTTCAGTATATATAATGCTGTCAAATGTTTATGCATCACTTGGAATGTGGGATAATTTAAGCAAAGTGCGAGAAGCTGTCAAAAAAGTAGGTATAAAAGGAGCTGGAAAAAGCTGGATCGAGATCTTTAGTTGA 1932 0.4037 MISVYAKCSHFDDARTLFDEMPQRNIVSYTTMVSAFTNSGRPHEALTLYNHMLEPKTVQPNQYLYSAVLKACGLVGDVELGKLVHQHVSQARLEFDTVLMNALLDMYVKCGSLRNAKRVFHEIPCKNSTSWNTLILGHAKQGLMRDALNLFDQIPEPDLASWNSIIAGLADNASPHALQFVSTMHGKGLKLDAFTFPCALKTCSLFGELTMGRQIHCCIIKSGFECSCYCISALIDMYSNCKLLDEAMKIFDKNYPLGESLALWNSMLSGYVANGDWWKALSMITRMHHSGAQFDSYTFSIALKVCIYFDNLRLASQVHGLVITSGYELDYVVGSILIDIYVKQGNINDALRLFGRLPDKDVVAWSSLIVGCARFGLGTLAFSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHSSCLKKGYESERVITTALTDMYAKCGQIEEALALFHCLLDIDTMSWTGIIVGCAQNGRADKAISLLHEMIESGTKPNEITILGVLTACRHAGLVEEAWTIFKSIETEHGLRPCPEHYNCMVDIFAQAGRFKEATNFINEMPFKPDKTIWCSLLGACGTYKNRHLANIVAEHLLATSPEDASVYIMLSNVYASLGMWDNLSKVREAVKKVGIKGAGKSWIEIFS 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0270 643 Pfam E motif 579 640 IPR046848 -
Aed10g0270 643 Gene3D Tetratricopeptide repeat domain 440 642 IPR011990 GO:0005515
Aed10g0270 643 Gene3D Tetratricopeptide repeat domain 265 417 IPR011990 GO:0005515
Aed10g0270 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
Aed10g0270 643 SUPERFAMILY TPR-like 26 618 IPR011990 GO:0005515
Aed10g0270 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Aed10g0270 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Aed10g0270 643 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 42 638 - -
Aed10g0270 643 Pfam PPR repeat 99 126 IPR002885 -
Aed10g0270 643 Pfam PPR repeat 130 154 IPR002885 -
Aed10g0270 643 Pfam PPR repeat 465 493 IPR002885 -
Aed10g0270 643 Pfam PPR repeat 536 560 IPR002885 -
Aed10g0270 643 Pfam PPR repeat 232 253 IPR002885 -
Aed10g0270 643 Pfam PPR repeat 335 361 IPR002885 -
Aed10g0270 643 Pfam PPR repeat 363 390 IPR002885 -
Aed10g0270 643 Pfam PPR repeat 436 458 IPR002885 -
Aed10g0270 643 TIGRFAM PPR: pentatricopeptide repeat domain 263 291 IPR002885 -
Aed10g0270 643 TIGRFAM PPR: pentatricopeptide repeat domain 27 54 IPR002885 -
Aed10g0270 643 TIGRFAM PPR: pentatricopeptide repeat domain 1 27 IPR002885 -
Aed10g0270 643 TIGRFAM PPR: pentatricopeptide repeat domain 465 498 IPR002885 -
Aed10g0270 643 TIGRFAM PPR: pentatricopeptide repeat domain 537 560 IPR002885 -
Aed10g0270 643 TIGRFAM PPR: pentatricopeptide repeat domain 335 363 IPR002885 -
Aed10g0270 643 TIGRFAM PPR: pentatricopeptide repeat domain 130 154 IPR002885 -
Aed10g0270 643 Pfam PPR repeat family 24 72 IPR002885 -
Aed10g0270 643 Pfam PPR repeat family 263 306 IPR002885 -
Aed10g0270 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Aed10g0270 643 PANTHER BNAC03G28070D PROTEIN 42 638 - -
Aed10g0270 643 Gene3D Tetratricopeptide repeat domain 127 216 IPR011990 GO:0005515
Aed10g0270 643 Gene3D Tetratricopeptide repeat domain 1 126 IPR011990 GO:0005515
Aed10g0270 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0270 Aed-Chr10 2207470 2209401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0270 1 641 Glycoside Hydrolase AT3G49170 31.098 9.37e-108 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0270 - - gmx:100780678 1187.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0270 10 2207470 2209401 Aed10g0270 10 2207470 2209401 ECH