Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0252 ATGGAAAACGCCGACGTTTTCTTGGGCTTACACGACTTCCTCGAGCGCATGCGGCAGCCCTCCGCCGCGGAATTCGTCAAAGCAATCAAAAGTTTCATCGTTTCGTTTTCGAATAATGCTCCTGATCCCGATAGGGACAGTGCAGCGGTTCAAGCGTTCCTCGCCAAAATGGAAGCCGACTTCAGGGCTCATCCACTTTGGGCTGGTTGCTCTGAAGAGGAGCTCGAAAGTGCCGGTGAAGGACTTGAGAAGTATGTTATGACAAAGTTATTTGTTCGTGTATTTGCTTCACTTCCAGATGATGTGAAACTTGATGACCAACTTTCTGAGAAGATGGCTTTGATCCAACAATTTATTCGACCTGAAAATTTGGATATCATGCCAGTATTTCAGAATGAATCATCATGGTTGCTTGCACAGAAAGAATTACAGAAGATCAACATGTACAAGGCACCCAGGGATAAACTTGTCTGTATTCTGAATTGTTGCAGGGTTATTAGCAACTTGCTGCTTAATGCTTCACTTGGTTCCAGTGAGAATCCTCCAGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTAACCATAAAGGCAAACCCTCCACAGCTGCACTCAAATCTACTGTACATACAAAGGTTTAGACATCAATCTCGATTGGTTGCAGAAGCAGCATATTATTTTACAAACATGCTCTCTGCTGAGTCCTTCATCTCAGACATCGATGCAAAAGCCATTTCAATGGATGAAGCGGAGTTTGAGAGAAATATGGAATTTGCTCGTGCTATGCTTTCGGGTAGTTCAGTTGATTCGCAAGATCCTGGTTCACCTTATCAAAATAATGGACAGCATCCAAGAGCAGAACCCCCTAAGCACAACGCTTTGAATGATAATAATGACCCTGCACTACGGACTCCATCATCTGTTGCAAAATCAGAAAGCAGGAAAGTGACTTTTGCAGATGAATCATTGATCACAAAAGTTCCATCCCTCTCGGATTTGGAGAATAAAGGAGCAAGTATGATTTTAAAGGAGGATAAGTTGAATGAAGTTTTTGGGGAGTTTCCATATTTGTTTGCTAGTGTAGATGACCTAACAGTAGGTGATGTTGAGGACCTGCTAAATAATTACAAACAACTTGTTTTCAAGTATGTTTCTCTTTCCAAAGGGTTAGGCGTCTCTCCTACACCTCATCCACCATCCAATTCCCAAAATGATTCTGAAGACCATGCTGAAACCACAATAGATGACAATAATAAATCAGAAGAATCTATTGATACAACAGAGGATAGTTCAGATATCAGTTGA 1305 0.4169 MENADVFLGLHDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPDRDSAAVQAFLAKMEADFRAHPLWAGCSEEELESAGEGLEKYVMTKLFVRVFASLPDDVKLDDQLSEKMALIQQFIRPENLDIMPVFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASLGSSENPPGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISDIDAKAISMDEAEFERNMEFARAMLSGSSVDSQDPGSPYQNNGQHPRAEPPKHNALNDNNDPALRTPSSVAKSESRKVTFADESLITKVPSLSDLENKGASMILKEDKLNEVFGEFPYLFASVDDLTVGDVEDLLNNYKQLVFKYVSLSKGLGVSPTPHPPSNSQNDSEDHAETTIDDNNKSEESIDTTEDSSDIS 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0252 434 MobiDBLite consensus disorder prediction 392 434 - -
Aed10g0252 434 MobiDBLite consensus disorder prediction 264 282 - -
Aed10g0252 434 MobiDBLite consensus disorder prediction 297 313 - -
Aed10g0252 434 MobiDBLite consensus disorder prediction 408 426 - -
Aed10g0252 434 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Aed10g0252 434 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Aed10g0252 434 MobiDBLite consensus disorder prediction 264 313 - -
Aed10g0252 434 Gene3D VPS9 domain 99 265 IPR037191 -
Aed10g0252 434 PANTHER BNAC09G47180D PROTEIN 1 399 - -
Aed10g0252 434 Gene3D - 17 97 - -
Aed10g0252 434 SMART vps9_2 135 254 IPR003123 -
Aed10g0252 434 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Aed10g0252 434 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 399 IPR045046 GO:0005085|GO:0016192
Aed10g0252 434 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0252 Aed-Chr10 2027853 2032112 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0252 K20131 - gmx:100810958 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0252 10 2027853 2032112 Aed10g0252 10 2027853 2032112 ECH