Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0249 ATGGCTACTTTTCTCTGGAACCAATCTCTGTTGGGTTCTTGTCCTTGTTCTACTCCCTTCTCCTCAAAGCCCTTCCAATCCCTAAAACCCCAAATCTTATCTTTTCCATCTCGCGGGTTTCCACGCCCACGCCCCCTTATCTCCTCTCTCAATCCAAGAACCCCATTCAAGTCTTCCCAAGATTCCTCTCCAACTACAAATGAAGATGATGATGAAGATGAAAAACCGTTACCCAATTTAACGGTCCTCCTTGAAGCATACAAGGAAGCCCTTTTTAATGGCGATCAAAATACCGAAGCTCAGATTGAAGAGGGGATATATTCAATAGCAAATAGGAAAAACAAATTGATTCAAAAAGTATCAAGTTTATTGGCAGACAAAGATGCTTCCAAGAAGAGTTATCTTCGTTTACAAGCTGATTTTGATAATTTTAGGAAAAGGATTGACAAAGAGCGACTTAACATCCAATCTGAAGCCCAACAAGAAGTCATTGAAAAGCTTTTGTTGATGGTCGACAATTTTGAGAGAACCAAACAGAAAATTAAAGCAGTAACTGAGAAAGAGAAGAAAATTGATGTTAGCTATCAAGGCATTTACAAACAATTTGTTGAGACTCTTAGGAGTCATAATGTTTCAGTGGTGGCAACAGTGGGCAAGCCGTTTAATCCCTTGCAACATGAAGCCATTGCACGTGAGGAGTCCACAGAGTTCAAGAAAGGGATTATAATTAAAGAATCCCAACGCGGCTTCATGCTCAGAGATCGAGTTCTAAGGCCAGCCCTTGTCAAGGTTTCCTTAGGTCCTGGAAATAAGAATTCTCCTGTGTCTCCTGACAAGTCCATGGAGCAAACTTCAACAGCTGCTGGAATAGATGAAAGATAG 882 0.4093 MATFLWNQSLLGSCPCSTPFSSKPFQSLKPQILSFPSRGFPRPRPLISSLNPRTPFKSSQDSSPTTNEDDDEDEKPLPNLTVLLEAYKEALFNGDQNTEAQIEEGIYSIANRKNKLIQKVSSLLADKDASKKSYLRLQADFDNFRKRIDKERLNIQSEAQQEVIEKLLLMVDNFERTKQKIKAVTEKEKKIDVSYQGIYKQFVETLRSHNVSVVATVGKPFNPLQHEAIAREESTEFKKGIIIKESQRGFMLRDRVLRPALVKVSLGPGNKNSPVSPDKSMEQTSTAAGIDER 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0249 293 PRINTS GrpE protein signature 163 178 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed10g0249 293 PRINTS GrpE protein signature 135 151 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed10g0249 293 PRINTS GrpE protein signature 218 233 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed10g0249 293 PRINTS GrpE protein signature 245 264 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed10g0249 293 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 212 266 IPR009012 GO:0006457
Aed10g0249 293 Gene3D - 93 207 IPR013805 -
Aed10g0249 293 MobiDBLite consensus disorder prediction 269 287 - -
Aed10g0249 293 MobiDBLite consensus disorder prediction 267 293 - -
Aed10g0249 293 MobiDBLite consensus disorder prediction 38 76 - -
Aed10g0249 293 Pfam GrpE 111 265 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed10g0249 293 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 115 209 IPR013805 -
Aed10g0249 293 Gene3D Head domain of nucleotide exchange factor GrpE 211 265 IPR009012 GO:0006457
Aed10g0249 293 CDD GrpE 131 264 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed10g0249 293 PANTHER GRPE PROTEIN 22 284 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed10g0249 293 Hamap Protein GrpE [grpE]. 60 266 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Aed10g0249 293 PANTHER GRPE PROTEIN HOMOLOG 22 284 - -
Aed10g0249 293 ProSitePatterns grpE protein signature. 221 264 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0249 Aed-Chr10 2012050 2014024 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0249 K03687 - gmx:100809893 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0249 10 2012050 2014024 Aed10g0249 10 2012050 2014024 ECH