Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0248 ATGGACTCCCAACCGGGTCTCTCCCTCGGGTTAAGCGCCCCTCTCTCATCACCCGCGGCTCCACTCAGTGACACCACCTCTGTTCCGTGGCGGTTATTCAACGAAAGACACCCCAAAAAGGAAGAAGAGGAAGAAGAAGAAGGCGACGATGAAACGATTAACTTCATGGACCAGCGCGTGAAGAGGAAGATAGAGGGACACCAAAACCCCTGTTTCCCTTCGAAGCGCGTGGCGGTGGATTCCTCAGTGGGGTGGTGGAACCAGCCACTGGGCGTTGCAGACCCCGAGATTTTCGACATCATGGAGAAAGAAAAACGAAGACAATTCAAGGGAATAGAGTTAATTGCTTCAGAAAACTTCGTGTGCAGGGCAGTGATGGAAGCTTTGGGAAGCCATTTAAGCAACAAATATTCGGAGGGAATGCCTGGGGCAAAGTACTACACTGGTAATCAATACATTGACGAGATTGAGTTTATGTGTTGCCAGCGTGCGTTGTTGGCTTTTGATCTTCACCCCAACAATTGGGGTGTTAATGTTCAACCTTATTCATGTACATCTGCTAACTTTGCTGTGTACACTGGGATTTTGCATCCCGGGGATAGGATCATGGGTCTTGATTCGCCTTCTGGGGGGCATTTGAGTCATGGTTATTATACTCTTGGTGGGAAGAAGGTTTCTGCTGCTTCTATTTTCTTTGAGACCATGCCTTATAAGGTTAATCCGCAGAGTGGTTACATGGACTATGATAAGCTTGAGGAGAAAGCGCTGGACTTTAGGCCTAAGATACTTATCTGTGGTGGGAGTTCGTATCCCAGGGAATGGGATTATGCGAGGTTCAGGCAGGTTGCTGATAAGTGTGGCGCGGTGTTGATGTGTGACATGGCTCATATCAGTGGTCTTGTGGCTGCCAAGGAAGTAGCTAGTCCATTTGATTACTGTGACATCGTTACCTCAACCACTCACAAAAGTCTCCGAGGTCCAAGGGGAGGTATCATCTTTTATAGAAGGGGTACAAAACCAAGGAAGCAAGGTTTTCATAATCATGGAGATGATAGTAATTATGATTTCGAGGAGAAAATAAATTTTGCTTTATATCCATCATTACAAGGAGGCCCCCACAATAATCATATTGCTGCACTTGCCATAGCTTTAAAACAAGTTGCAACTCCAGATTACAAAACATACATGCAGCAGGTGAAGAGAAATGCGCAGGCATTAGCATCTGCCTTGTTGAGAAGAAATTGCAGATTGGTCACTGGTGGGACCGACAACCATCTTTTGCTATGGGACCTAACAGCACTTGGCTTAATTGACAGAAACTATGAAAAGGTCTGTGAGGCGTGTCACATCACTCTCAATAAATGTGCCATTTATGGTTCGATTTCTCCTGGAGGAGTGAGAATCGGGACTCCAGCAATGACATCAAGAGGCTGTTCAGAGGAAGATTTTGAGACCATAGCTGATTTTCTTCTAAGGGCAGCTCAGATTACCAGCATTGTGCAAAGGGAACATGGCAAATCTTGCAAAGATTTCCTCAAGGGTCTTCAGAATAACAAAGACATTTCTGAGCTCAGGAATCGGGTTGAGACATTCAGTTCCCAGTTTGCAATGCCAGGATTCGATATTTGA 1629 0.4573 MDSQPGLSLGLSAPLSSPAAPLSDTTSVPWRLFNERHPKKEEEEEEEGDDETINFMDQRVKRKIEGHQNPCFPSKRVAVDSSVGWWNQPLGVADPEIFDIMEKEKRRQFKGIELIASENFVCRAVMEALGSHLSNKYSEGMPGAKYYTGNQYIDEIEFMCCQRALLAFDLHPNNWGVNVQPYSCTSANFAVYTGILHPGDRIMGLDSPSGGHLSHGYYTLGGKKVSAASIFFETMPYKVNPQSGYMDYDKLEEKALDFRPKILICGGSSYPREWDYARFRQVADKCGAVLMCDMAHISGLVAAKEVASPFDYCDIVTSTTHKSLRGPRGGIIFYRRGTKPRKQGFHNHGDDSNYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVATPDYKTYMQQVKRNAQALASALLRRNCRLVTGGTDNHLLLWDLTALGLIDRNYEKVCEACHITLNKCAIYGSISPGGVRIGTPAMTSRGCSEEDFETIADFLLRAAQITSIVQREHGKSCKDFLKGLQNNKDISELRNRVETFSSQFAMPGFDI 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0248 542 MobiDBLite consensus disorder prediction 1 51 - -
Aed10g0248 542 Gene3D Aspartate Aminotransferase, domain 1 94 538 IPR015422 GO:0003824
Aed10g0248 542 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 67 542 - -
Aed10g0248 542 Gene3D - 119 397 IPR015421 GO:0003824
Aed10g0248 542 PIRSF SHMT 68 542 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aed10g0248 542 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 314 330 IPR019798 GO:0030170
Aed10g0248 542 SUPERFAMILY PLP-dependent transferases 85 539 IPR015424 -
Aed10g0248 542 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 67 542 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aed10g0248 542 CDD SHMT 94 531 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Aed10g0248 542 Pfam Serine hydroxymethyltransferase 92 489 IPR039429 -
Aed10g0248 542 Hamap Serine hydroxymethyltransferase [glyA]. 89 539 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0248 Aed-Chr10 2005820 2010837 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0248 K00600 - gmx:100776419 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0248 10 2005820 2010837 Aed10g0248 10 2005820 2010837 ECH