Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0229 ATGGCAGCTTTCCGCGCCGTGCTTCGTCACATACACATAAGCAAGTTCAGCTGCTACGCTCCACCGCCGCCGCGCCAACCTATGGCGTTGTTTTTAAGTCAAGGCGCCACGTGGAAATGTCTTATTCCCTCTAAACCCTACTCCAGAACATTCAAATCCCACGCCGGTTCAGAGAACTGCAACTTAGTGTTAAAGAAAGATGAGCGCTTAGGAGAGTGTGTCGACGAGGTTGGTAATGGTACTGCGACCACAATTGCGGCCATCGTAACTTCATTGGGGGGTCCCCCTGCGGCCGTTGGAATTGTTCGACTTTCGGGCCCTGGGGCAGTGTCTATTGTGGGCCGAGTGTTTCGGCCCGCCAGGAAGACGTGGCGGCCCACCAGCCACGTTGTCGAATACGGCGTCGTCTTGGACTCCGACGGTAACGTTATCGACGAGGTCCTTGCGGTGCCCATGCTGGCTCCGAGGTCGTACACGCGCGAAGACGTGGTGGAGCTTCAGTGCCACGGGAGCGAAGTGTGTCTTCGCCGCGTGCTAAGGACTTGTTTGGAAGCTGGAGCAACACTTGCTCAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGTCGTTTAGATCTCTCACAAGCCGAAAACGTTGCGAGATTAATCAGCGCCAAATCCGTGGCTGCTGCAGATGCTGCACTGGATGGAATCCAGGCATGTCTAATTCAACTTTGTTTCCATGGTGGCTTCTCTTCGCTTGTTCGATCATTGAGGAGTCACTGCATTGAGTTGCTTACTGAGATTGAAGCTCGTTTGGATTTTGATGATGAGATGCCACCGCTGGATTTGAATGTGGTTATGGATAAAATCCATAAAATGTCACGAGAGGTTGAGAATGCATTGGAGACGGCAAATTATGACAAGCTTTTGCAATCTGGATTACAGATAGCAATTGTTGGCCGCCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGTGTCAGTGGCATTCCTATAACCCTCCTTGATACAGCAGGCATCAGGGACACAGATGACATTGTGGAAAAGATTGGTGTAGAGCGATCTGAAGCAGTCGCTAGGGGTGCTGATTTAATTATAATGACTGTGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCAGATAAGGGATCAACTGGATCATCCACCCCAGTCATTCTTGTGATCAACAAGATAGATTGTAAACCTCGTGCTGAGACTGAATGGGACAAAGGATGTCAGAGTCATATTTTCAGTAAACATGTGTTTACATGTGCCGTTACTGGTCAAGGATTGCATGACTTAGAGAGAGCGGTATTACAGATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGTAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAAGAAGCACTTGCAAGGTTACAATCATCAATAAAGGAGGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCAGCATTGTCCCTTGGACAGATAAGTGGAGAAGATATATCGGAGGAGGTTTTGTCAAATATATTTGGCAAGTTCTGTATTGGTAAATAG 1671 0.48 MAAFRAVLRHIHISKFSCYAPPPPRQPMALFLSQGATWKCLIPSKPYSRTFKSHAGSENCNLVLKKDERLGECVDEVGNGTATTIAAIVTSLGGPPAAVGIVRLSGPGAVSIVGRVFRPARKTWRPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLISAKSVAAADAALDGIQACLIQLCFHGGFSSLVRSLRSHCIELLTEIEARLDFDDEMPPLDLNVVMDKIHKMSREVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSDKGSTGSSTPVILVINKIDCKPRAETEWDKGCQSHIFSKHVFTCAVTGQGLHDLERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0229 556 CDD trmE 306 477 IPR031168 -
Aed10g0229 556 Pfam GTP-binding protein TrmE N-terminus 84 204 IPR018948 -
Aed10g0229 556 TIGRFAM small_GTP: small GTP-binding protein domain 309 436 IPR005225 GO:0005525
Aed10g0229 556 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 83 556 - -
Aed10g0229 556 Pfam MnmE helical domain 207 553 IPR025867 -
Aed10g0229 556 Pfam 50S ribosome-binding GTPase 310 431 IPR006073 GO:0005525
Aed10g0229 556 Gene3D - 309 484 IPR027417 -
Aed10g0229 556 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 308 477 IPR031168 -
Aed10g0229 556 PANTHER TRNA MODIFICATION GTPASE GTPBP3 83 556 - -
Aed10g0229 556 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 97 556 IPR004520 GO:0003924|GO:0005525|GO:0006400
Aed10g0229 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 472 IPR027417 -
Aed10g0229 556 Hamap tRNA modification GTPase MnmE [mnmE]. 83 556 IPR004520 GO:0003924|GO:0005525|GO:0006400
Aed10g0229 556 Gene3D tRNA modification GTPase MnmE domain 2 205 556 IPR027368 -
Aed10g0229 556 Gene3D Probable tRNA modification gtpase trme; domain 1 72 204 IPR027266 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0229 Aed-Chr10 1851507 1854740 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0229 K03650 - gmx:100779193 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0229 10 1851507 1854740 Aed10g0229 10 1851507 1854740 ECH