Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0222 ATGGAGCCCTTTAACAACGATGATCTCGAATACGTCGTCGACGACTACTACGATTTCGAAACAGAAGACACCTCCTCCGACATTGCTCCTCAACCAACCTCCAATATTGATTCTCAGGACTCCGATTTTGAAGACGATTTTCTAACGAGTAATGCGAAGACTGATACCACTGCTTCGGATGCCAGAAACGGGAAAGATATTCAGGGAATCCCGTGGGAGAGGCTCAATTACAGCAGAGACAAATACCGCCAGACCAGACTCAAGCAGTACAAAAATTACGAGAACCTCTCGCGCTCTCGCCACAATATCGACAAGGAGTGTTTTAAAGTGCAGAAGGGGAAGACTTTTTATGACTTCTTCTTCAATACCAGGCTTGTCAAATCCACAATTGTGCACTTCCAGGTAGTCACTTCGTTCATCGCTGCTTGTTATGTAGATTCTACAACACTCGGGGGTATTCGGGCCATTCATTTGCGATCTTATGCCTTTTACTGCTACATGTCGAATACTCTTTTCTACAGACAAGACGGTTTCATGCCAATTTATGGGTGTGGATACATCAAGGCTATGCTGAGGAATTTGTTGTGGGCAACTTCGAAGCATGATGTATACCTTATGCAAAACTATTCAGTGATGCACTGGTTCGCATTACAACGAAGGGGTACAGAAGTGCTCAACGTAGCCAAGCCAATCATTCCAACCCTTAAGCGACCAGGATTTTTAGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTCAAGGAAAATCTGATGGTGGCAGGTGGTTTCCAGGGTGAGCTTATATGCAAGAGTTTGAAACATCCTGGAGTTCTATTCTGTGGTAAAATAACTACAGATGATAATGCCATAACCAATGCTGTGGATGTTTTCCGCAATCCAGCAGGGTCATTGAGGGTCATCACAGCAAATAATGATTCCCAAGTTCGAGTTTTCGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAACACTTGTGTTAGTCCAGATGGAAAGTTGTTAGCTGTTCTTGGGGACAGTACTGAGTGTTTGATGGCTGATGCTAACACGGGAAAGATTACTGGGAGCCTAAAAGGGCACTTGGACTACTCTTTTTCATCGGCTTGGCACCCAGATGGACAAATATTGGCCACTGGGAATCAGGACAAAACATGCAGGTTGTGGGACATAAGAAATCTCTCACAGTCTATTGCCGTGTTAAAGGGAAGAATAGGTGCAATAAGAGCCTTAAAATTCACTTCTGATGGACGATTTTTGGCCATGGCTGAGCCTGCAGACTTCGTCCATATTTTTGACTCACATTCGGGTTATGAACAATGTCAAGAGATAGATCTATTTGGCGAGATTGCTGGTATATCCTTTAGCCCAGACACAGAGGCTCTATTTGTGGGTATTGCTGACCGAACCTATGGGAGCTTGTTAGAGTTCAACAGAAAACGTTACTATAACTACCTAGACTCGTTTTGA 1512 0.4378 MEPFNNDDLEYVVDDYYDFETEDTSSDIAPQPTSNIDSQDSDFEDDFLTSNAKTDTTASDARNGKDIQGIPWERLNYSRDKYRQTRLKQYKNYENLSRSRHNIDKECFKVQKGKTFYDFFFNTRLVKSTIVHFQVVTSFIAACYVDSTTLGGIRAIHLRSYAFYCYMSNTLFYRQDGFMPIYGCGYIKAMLRNLLWATSKHDVYLMQNYSVMHWFALQRRGTEVLNVAKPIIPTLKRPGFLAQPVSRVQISTMTVKENLMVAGGFQGELICKSLKHPGVLFCGKITTDDNAITNAVDVFRNPAGSLRVITANNDSQVRVFDAENFASLGCFKYDWSVNNTCVSPDGKLLAVLGDSTECLMADANTGKITGSLKGHLDYSFSSAWHPDGQILATGNQDKTCRLWDIRNLSQSIAVLKGRIGAIRALKFTSDGRFLAMAEPADFVHIFDSHSGYEQCQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRKRYYNYLDSF 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0222 503 Gene3D - 282 498 IPR015943 GO:0005515
Aed10g0222 503 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 407 - -
Aed10g0222 503 SUPERFAMILY WD40 repeat-like 243 489 IPR036322 GO:0005515
Aed10g0222 503 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 503 - -
Aed10g0222 503 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 413 IPR001680 GO:0005515
Aed10g0222 503 PANTHER OS03G0386000 PROTEIN 1 503 - -
Aed10g0222 503 MobiDBLite consensus disorder prediction 24 38 - -
Aed10g0222 503 ProSitePatterns Trp-Asp (WD) repeats signature. 391 405 IPR019775 -
Aed10g0222 503 SMART WD40_4 267 321 IPR001680 GO:0005515
Aed10g0222 503 SMART WD40_4 408 447 IPR001680 GO:0005515
Aed10g0222 503 SMART WD40_4 365 404 IPR001680 GO:0005515
Aed10g0222 503 SMART WD40_4 324 362 IPR001680 GO:0005515
Aed10g0222 503 Pfam WD domain, G-beta repeat 367 404 IPR001680 GO:0005515
Aed10g0222 503 MobiDBLite consensus disorder prediction 22 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0222 Aed-Chr10 1788540 1793738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0222 291 484 Miscellaneous Gene Families AT5G08390 26.020 4.29e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0222 - - gmx:100775453 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0222 10 1788540 1793738 Aed10g0222 10 1788540 1793738 ECH