Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0180 ATGTTCCATCAGCCATTACTTTACGGTTCAAAACTCGCCACTCGCTCCACACTCTTCGCTCCGGTTTTCTCCGGCGGAAACAACACCGGCGGCCGTTTTTCGTTTGCCGGAAATTCGTCCGTCCGTGACGTGAGGTCGCTGAGGTTTATGAAGCAAGCATCGGGATGCAAATCGAACAATGAACATGGAGTTTTTAGCGAGACAATGAATCGTTGCAAGCATAGGACAACTAATGCTTATGGTGGTCGTGCTCAAGAAGGGCTTCTTGAGGAAGAATCCTCCAAGGTGATAGAGAGCAGACCATCGTGGAATTTTTTTCCAGGCCAGGCATTTCCATTGGGGGTATCGGAAGTTGACAATGGCATCAATTTTGCTATTTTTTCACAACATGCAACTGCTGTCACACTTTGTTTAGTCCTTACTGAGAGGGGAAGTACCGATGCATTGGATGGTGGCATGATAGAAATGGTTTTGGATCCTGATTTGAACAAAACCGGGGACATTTGGCACATATGTATTGAGGATCTTCCACGAAGCAATGTTCTGTATGGCTTTTGCATAGATGGACCTCAAGACTGGGGTAAGGGGCATCGATTTGACAACAGCATTGTGCTTGTTGATCCTTATGCAAAACTAGTTGATGGTCGAAGATATTTTGGGGATATTAGCATGAAGTTGTCTAAGTTTCTTGGCACATATGATTTTGACAGCTTGCCTTTCGACTGGGGAGAAACTTACAAGCTTCCAAATATTTCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAATTGATGAATCTAGTGGTTTGGATAACAACATTCGTGGAAGCTACCTCGGTGTGATTGAAAAGATTCCACACCTTTTAGAGCTTGGCATCAATGCAGTAGAGTTGTTGCCTGTCTTTGAGTTTGATGAGTTTGAATTCCAGAGGCGTCCAAATCCCAGAGATCACATGATTAACACATGGGGTTACTCAACATTAAATTTCTTTGCTCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCCCGAGAGTTCAAGCAAATGGTTAAAGCCTTACACTCTGCTGGTATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAGTCTGATGATGCCTTTCCATACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAATAATGGGCAATTGCTGAACTTCTCTGGCTGTGGAAATACATTGAATTGTAACCATCCTGTGGTCATGGAGCTAATACTTGAAAGCCTAAGACACTGGGTCACTGAGTATCATGTGGATGGATTTCGATTTGATCTTGCGAGTGTCCTGTGTCGAGGAATTGATGGCTCCCCACTTAATGCCCCCCCACTTATTAAGGCAATTGCTAAAGATGCAGTATTATCAAGATGTAAAATTATTGCAGAGCCTTGGGATTGTGGAGGTCTCTATCTTGTTGGGAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAATTTATTAAGGTAATTCTAAGAGACTAA 1578 0.4259 MFHQPLLYGSKLATRSTLFAPVFSGGNNTGGRFSFAGNSSVRDVRSLRFMKQASGCKSNNEHGVFSETMNRCKHRTTNAYGGRAQEGLLEEESSKVIESRPSWNFFPGQAFPLGVSEVDNGINFAIFSQHATAVTLCLVLTERGSTDALDGGMIEMVLDPDLNKTGDIWHICIEDLPRSNVLYGFCIDGPQDWGKGHRFDNSIVLVDPYAKLVDGRRYFGDISMKLSKFLGTYDFDSLPFDWGETYKLPNISEKDLVIYEMNVRAFTIDESSGLDNNIRGSYLGVIEKIPHLLELGINAVELLPVFEFDEFEFQRRPNPRDHMINTWGYSTLNFFAPMSRYASAGGGSVNASREFKQMVKALHSAGIEVILDVVYNHTNESDDAFPYTTSFRGIDNKVYYMLDNNGQLLNFSGCGNTLNCNHPVVMELILESLRHWVTEYHVDGFRFDLASVLCRGIDGSPLNAPPLIKAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKVILRD 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0180 525 SUPERFAMILY E set domains 107 244 IPR014756 -
Aed10g0180 525 Gene3D Immunoglobulins 93 230 IPR013783 -
Aed10g0180 525 PANTHER GLYCOGEN DEBRANCHING ENZYME 86 520 - -
Aed10g0180 525 SUPERFAMILY (Trans)glycosidases 239 520 IPR017853 -
Aed10g0180 525 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 112 210 IPR004193 GO:0004553|GO:0005975
Aed10g0180 525 Gene3D Glycosidases 236 524 - -
Aed10g0180 525 CDD E_set_GDE_Isoamylase_N 111 260 IPR044505 -
Aed10g0180 525 Pfam Alpha amylase, catalytic domain 281 401 IPR006047 GO:0005975
Aed10g0180 525 SMART aamy 260 516 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0180 Aed-Chr10 1424735 1439938 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0180 83 520 Glycoside Hydrolase AT4G09020 76.712 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0180 K01214 - gmx:100806342 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0180 10 1424735 1439938 Aed10g0180 10 1424735 1439938 ECH