Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0125 ATGGACTCCGTTCCGTTTCGCGATGGCAACATACACACCATTCTCGACTCCCGATATCTCCACTCTCCACTGGATGTTAATCATAGTTTGCACACTCATTCCTCGTTGATTCGGAGGCTTTCTCAAGAAACGGAGTTAGAGGTTGGTAACGGTCACCTTGGCTGTGTCAATGCGGTGGCTTGGAACTCCACAGGTTCATTACTGATATCCGGATCAGATGATACACGGATCAATATTTGGAGCTATTATTGCCGGAAACTTTTACATTCAATTGACACAGGACATACTGCAAATATATTCTGTACTAAGTTCATACCAGAAACTTCTGATGAGCTTGTAGCCTCTGGTGCTGGAGATGCTGAAGTCCGGTTATTTAATTTGTCTCGCTCAAGTGGTAGTGGATTTAGTGACAATGCCATCATTACTCCATCTGCACTTTACCAATGCCACACTCGAAGAGTCAAGAAATTGGCTGCTGAAAATGGAAACCCCAATGTAGTATGGAGTGCTAGTGAAGATGGTACCCTAAGACAACATGATTTTCGGGAAGGTACCTCTTGTCCTCCAGCTGGATCTTCACACCAAGAGTGTCGAAATATTCTTCTTGACTTACGAAGTGGATCTAAAAGGTCACTTGCTGATCCTCCTAAACAAGTCCTTGCTTTAAAATCTTGTGATATTAGTTCAACTAGACCACATTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGCTTATATGATAGAAGGATGCTGCCGCCTCTTAGTTCATGTCGGAAAAGACTGTCTCCACCTCCTTGTGTTAATTATTTCTGTCCAATGCATCTTTCTGATCGTGGACATCCAAGCTTGCACTTAACTCATGTTACATTCAGTCCTGATGGACACGAGGTTCTCCTCAGCTATAGTGGAGAGCATGTTTACTTGATGAATGTAAATCATGCTGGAGTGAATGAGATGCAATATACTTCAGAAGATGTATCAAATATGATGACATACTCTCCTACAATTAATGGGACAGAGATGCAGCCTTGTGTATCCAATGTCTTCCCAAATGGATTTCCTATTAAAAAGAACATCACTGCAAAGCTTGACGAGTGCAGGAAACTAATAAAATATGCTAAGAAATCATTGGACAATGGAACACCATATGATGGAATCGAGGCATGCAATGAGGTTTTGAATGTCTATAGCCATATTATTGGGCCTGCAATGAGACATGAATGCTTGTGTACTCGTGCTGCACTATTGGTCAAGAGGAAGTGGAAAAACGATGCTCATATGGCTTTAAGAGACTGCTATGCTGCTAGGAAAATTGATAATTCCTCTTATAAAGCACTTTACTGCATGTCAGAAGCATTGTCACAGTTGGGTAGACATGAAGATGCTTTGGAGTTTGCTGCTGCTTCCCATTCATTGGCCCCAACCAAATCTGAAGTTGCAGAAAGAGTGGCAAATGTGAAGAGGGACATTGCTTTCGCTGAAGCTGAAAAAAATAGTAAGACCAATGATAAGGCATCAAGGTTTGATAGTCGGGGTGGAAGAATATTATCATTAAGTGACATACTTTATCGTCCTGAGGCTAATGGGGATGGTCCAAGATCAGAGAGGGATGATTCTGATTACGATGAGGAATTGGAGTTGGACTTTGAAACATCAATATCTGGTGATGAGGGTCATGATCTTGAATCAAATATTCTTCATGGAAGTTTAAATCTTAGAATTCATCGGAGAGATGATGACTCCAGAGACAATGCTGGGGCAAGTGGCTCATGCGAATCACCTTCATCATCATCACAGAACAGTAGAACGTCTTATCAGCCTGAACCAGCTGTTGATATGAAACATAGATTTGTTGGCCACTGCAATATTGGGACGGACATAAAACAAGCCAATTTTCTTGGTCAAAGAGGTGAATATGTTGCTAGTGGAAGTGATGATGGCAGATGGTTTATTTGGGAAAAGCGTACGGGTAGACTCATAAAAATGCTGAATGGTGATCAATCTGTTGTAAATTGTGTACAATGCCATCCATTTGATTTTGTTGTTGCAACCAGTGGGATTGATAGCACAATAAAGATATGGACTCCAAATGCTCCTGTTCCATCTTCTGTAGCTGGTGGTTCAGCCGGACCAGAAACTGGTGAGGTGTTGGATGCTATGGAGAGCAATCAAGAAAAGCTATCCCGTAGCCATAATTCTATCTTGCCCTTTGGGGTTTTGGAACCATTTAGAATGCAGGAGTTTCCTGAAGGGTCGTTACGCTTGCGTCCATTTGAATGTGCTCAAAGCTAA 2295 0.42 MDSVPFRDGNIHTILDSRYLHSPLDVNHSLHTHSSLIRRLSQETELEVGNGHLGCVNAVAWNSTGSLLISGSDDTRINIWSYYCRKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVRLFNLSRSSGSGFSDNAIITPSALYQCHTRRVKKLAAENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRKRLSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVNHAGVNEMQYTSEDVSNMMTYSPTINGTEMQPCVSNVFPNGFPIKKNITAKLDECRKLIKYAKKSLDNGTPYDGIEACNEVLNVYSHIIGPAMRHECLCTRAALLVKRKWKNDAHMALRDCYAARKIDNSSYKALYCMSEALSQLGRHEDALEFAAASHSLAPTKSEVAERVANVKRDIAFAEAEKNSKTNDKASRFDSRGGRILSLSDILYRPEANGDGPRSERDDSDYDEELELDFETSISGDEGHDLESNILHGSLNLRIHRRDDDSRDNAGASGSCESPSSSSQNSRTSYQPEPAVDMKHRFVGHCNIGTDIKQANFLGQRGEYVASGSDDGRWFIWEKRTGRLIKMLNGDQSVVNCVQCHPFDFVVATSGIDSTIKIWTPNAPVPSSVAGGSAGPETGEVLDAMESNQEKLSRSHNSILPFGVLEPFRMQEFPEGSLRLRPFECAQS 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0125 764 Pfam WD domain, G-beta repeat 660 695 IPR001680 GO:0005515
Aed10g0125 764 Pfam WD domain, G-beta repeat 49 81 IPR001680 GO:0005515
Aed10g0125 764 SMART WD40_4 269 311 IPR001680 GO:0005515
Aed10g0125 764 SMART WD40_4 215 248 IPR001680 GO:0005515
Aed10g0125 764 SMART WD40_4 42 81 IPR001680 GO:0005515
Aed10g0125 764 SMART WD40_4 611 654 IPR001680 GO:0005515
Aed10g0125 764 SMART WD40_4 657 696 IPR001680 GO:0005515
Aed10g0125 764 SMART WD40_4 140 180 IPR001680 GO:0005515
Aed10g0125 764 SMART WD40_4 84 126 IPR001680 GO:0005515
Aed10g0125 764 MobiDBLite consensus disorder prediction 587 608 - -
Aed10g0125 764 MobiDBLite consensus disorder prediction 578 608 - -
Aed10g0125 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 49 90 IPR001680 GO:0005515
Aed10g0125 764 Gene3D - 45 341 IPR015943 GO:0005515
Aed10g0125 764 SUPERFAMILY TPR-like 364 487 IPR011990 GO:0005515
Aed10g0125 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 695 IPR001680 GO:0005515
Aed10g0125 764 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 21 735 - -
Aed10g0125 764 Coils Coil 477 504 - -
Aed10g0125 764 Gene3D - 559 700 IPR015943 GO:0005515
Aed10g0125 764 MobiDBLite consensus disorder prediction 522 542 - -
Aed10g0125 764 Gene3D Tetratricopeptide repeat domain 360 491 IPR011990 GO:0005515
Aed10g0125 764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 49 81 - -
Aed10g0125 764 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 21 735 IPR045151 -
Aed10g0125 764 SUPERFAMILY WD40 repeat-like 49 695 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0125 Aed-Chr10 952659 961126 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0125 K11807 - gmx:100793917 1380.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0125 10 952659 961126 Aed10g0125 10 952659 961126 ECH