Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0116 ATGTCTCTGTCTCGCGCCTATATTAAAGACCTCACGCCCCGCCATGCATGCACACAAAGCTACTACCTTGGATATCCTTCCGAGTCAGAAACCATGGACGTTAAGTTCGGCACCACCACCTTAATACTTTTGTGTGTAGTTTGGGTGATGCAGAGGGTGAATGGCATTGACCCTTGTGCCTCTCAACCTGATAAGTCCGACCTCAACGTGATTCCCATGTACAGCAAATGCTCACCGTTCAAGGCACCCACACCCAAGGCAGATTCGTGGGACAACAGAATCATAAACATGGCCTCAAAAGACCCGGCCCGAGTCAAGTACCTGTCAACCTTAGTGGGTCAAAAGACCGTCTCCACGGCCCCAATCGCTTCAGGCCAGGCCTTCAACATCGGCAACTACGTCGTCAGGGTCAAACTCGGAACCCCCGGTCAACTTCTCTTCATGGTCCTCGACACCAGCACCGACGAGGCCTTTGTCCCGTGCTCCGGCTGCACGGGATGCTCCGACACCACTTTCTCCCCCAAAGCCTCCACCAGCTACGGCCCGTTGGACTGCTCCGTCCCCCAGTGCAATCAGGCCCGTGGGCTTTCCTGCCCCACCACCGGAACCGGCGCGTGCTCCTTCAACCAATCCTACGCCGGCTCGTCTTTCTCCGCCACACTAGTCCAAGACTCGTTGAGCTTAGCCACTGATGTTATCCCCAACTACTCCTTCGGTTGCGTGAATTCCATCTCCGGCGCCACGGTTCCGGCCCAAGGGCTTTTGGGCCTGGGCCGAGGCCCGTTGTCGCTACTCTCCCAATCCGGGTCTAACTACTCAGGTATATTCTCTTACTGCCTCCCAAGCTTCAAGTCCTACTACTTCTCCGGGTCGCTGAAACTCGGGCCCGTAGGCCAGCCCAAGAGCATTCGCACCACCCCGCTTCTACGCAACCCGCACCGTCCTTCTCTTTACTACGTGAACTTCACCGGAATCAGCGTGGGGCGCGTGCTGGTTCCATTTCCCAGCGAGTATCTCGGGTTTAACCCAACCACCGGATCCGGAACCATAATCGATTCGGGCACGGTGATAACCCGGTTCGTGGAGCCAGTGTACAACGCGGTGAGGGAGGAGTTTAGGAAGCAAGTGGGAGGCACTACATTCACGAGCATTGGAGCATTCGACACGTGTTTCGTGAAAAACTACGAAACTCTGGCGCCGCCAATTACGCTGCACTTCGAGGGGTTGGACCTGAAGCTTCCACTAGAGAACAGCTTGATCCATAGCAGCGCGGGGTCGCTGGCGTGTCTTGCGATGGCGGCGGCACCGGCCAATGTGAACTCTGTGTTGAACGTGATCGCCAACTTCCAACAACAGAACCTTAGGATTTTGTTTGATACCGTCAATGATAAAGTTGGCATAGCCCGTGAGGTTTGTAACTAG 1422 0.5563 MSLSRAYIKDLTPRHACTQSYYLGYPSESETMDVKFGTTTLILLCVVWVMQRVNGIDPCASQPDKSDLNVIPMYSKCSPFKAPTPKADSWDNRIINMASKDPARVKYLSTLVGQKTVSTAPIASGQAFNIGNYVVRVKLGTPGQLLFMVLDTSTDEAFVPCSGCTGCSDTTFSPKASTSYGPLDCSVPQCNQARGLSCPTTGTGACSFNQSYAGSSFSATLVQDSLSLATDVIPNYSFGCVNSISGATVPAQGLLGLGRGPLSLLSQSGSNYSGIFSYCLPSFKSYYFSGSLKLGPVGQPKSIRTTPLLRNPHRPSLYYVNFTGISVGRVLVPFPSEYLGFNPTTGSGTIIDSGTVITRFVEPVYNAVREEFRKQVGGTTFTSIGAFDTCFVKNYETLAPPITLHFEGLDLKLPLENSLIHSSAGSLACLAMAAAPANVNSVLNVIANFQQQNLRILFDTVNDKVGIAREVCN 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0116 473 Gene3D Acid Proteases 296 473 IPR021109 -
Aed10g0116 473 PANTHER ASPARTYL PROTEASE AED3 38 473 - -
Aed10g0116 473 Pfam Xylanase inhibitor N-terminal 133 295 IPR032861 -
Aed10g0116 473 PANTHER ASPARTYL PROTEASE-RELATED 38 473 IPR001461 GO:0004190|GO:0006508
Aed10g0116 473 Pfam Xylanase inhibitor C-terminal 318 468 IPR032799 -
Aed10g0116 473 SUPERFAMILY Acid proteases 126 472 IPR021109 -
Aed10g0116 473 Gene3D Acid Proteases 111 295 IPR021109 -
Aed10g0116 473 ProSiteProfiles Peptidase family A1 domain profile. 133 468 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0116 Aed-Chr10 883595 885016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0116 123 473 Miscellaneous Gene Families AT1G77480 26.546 1.84e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0116 - - gmx:100816307 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0116 10 883595 885016 Aed10g0116 10 883595 885016 ECH