Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0115 ATGCGTGTGACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTCTAGTGTTTTCTGTCGTGGTGCAGTTCATCGCCTCCGTCATTCGGCTTAAATGGCGGGTTTCGGAGGCTAGGAAGGAGGAGATCAACAGACTTTTGTTTTTGGCCGCGGAGGAAACTGCCAGGGCCGAGAATGAAGCCAACTATGACTACGGCACGGCCGTTTCCGCCGCTCTCAGCAATCAATGCGCCGTCTGCTATTTTCCCGCCACCGCGCGCTGCGCTCAGTGCAAATCGATTCGCTACTGTTCTTTTAAGTGCCAAACTTTTCATTGGCGTCAAGGTCACAAGTTAGAATGCCGTCCTCCCAGCACAACTCACTGGAGTGATGATGTAACAAGTGATCTTGGCAGCAAGGTAGTAGAGCAAGGCTACTCTGGAATCCATGTTGAGAAGTCTGAAAGCAAAGGCAAAGAATGTAAAATAGCCTCTGAAAAGCCCCCTATTTCTGATATTTGCTTTTCTCCAAAAGTTTCATCTGGAAAGGATGAAAGTATTAGAGTTGAGTCTCTTACAGAGGGAAATATAACAGATTCTAATTCTGAATTGTCCAGTAACTCATTTTCTGGATTCTCAGCTTCCATTGGTTCTAGTGATTCATCTGATGATTCCTCTGTCTGTGAGAGCATCATCTCAAACGAGCATGATGGATCAGAGGAACATACTTTTGTTGATCCCGCCCTTGACATCCCTGATAACACTGGTGATGATACCATGGGTGCAACCATGTCTTCTTCGCCAAAGTTTGCTACTTTGGTTGGTTCAGTAGATGTATTTTCTTCAATGCATAAATTAAATCACACTGAACCTGGTTTTAGTAAAGAAGAGAGTAAGCTTGCATCAAATGGTAATTCAGGTTCAAGTATGTGGAAGGGGAAAACAATTGAGCCTTCTACAGTGTTTTCAGGATTCTGGGATAAAGCTCTTGATTCAAGAGGGATTAAAGATGATACTAAGAATGACACTCATCCATCCCATTCTGATGAATCCACAAGCAAAAAGACTGTTTCTGAATCTTCATTTCACTTTTCATTCAGTACCATGCCTCCTTTGAATGTACGAGATACCAAGACAAATGATTCTGTATCTGATGATACTTTTCCAAACTGTATTGGGAACAATATGGCATGTTCAGGATCAGCATCGTCTGAGAATGACAACATGAATTTGTCAAAAGGGAGGAATTTCTCGTCCATCAACAGCAAAGTTTCCTATCTTAGGAGTAATGTTACTCCAAGTGGTTCTGAATCCGATCAATTGGAATCTAAAGACAACTCTGGGCCACCTTTATCATCTTTCTCCCCTCAATCCTCCAGTGTTGTCAAAGATTCAGTTTCTGCAGATGCTTTGATCTTCCATAACTTGCAATCGACTGGCTCTATGGTATCCAATCATGTTGTGGACAACCATGACAGCACCTTGAAGTCCACTAAAATTAGATGCTGGACACGTGAACTTGATTCTCATTTAGCTTCTGGAACTGAAGAGCATTCTCATTCCATTTCAAAACATGGGGATAATGACATTGAATCGGGCACTCGAGCTGTCACTTCCTCTCAGGTTGCTAGCTGTTCTGCAAATTCTAAGAGTGGCTTGAAAACATCTGTTTTGAAAGTTGTTGACCAGTTTAGAGGATCAAATTTGTCAAAGCACTTTCCATTAGCTGTTGGGAGTGATATTGCTGGAAGACATAGTGACAAGAGTTTTTTCCCTTATGAATTGTTTGTCAAGCTTTATAACTCGAACGAGGTGGAGTTATGCCCATATGGTCTTATAAATTGTGGAAACAGTTGTTATGCTAATGCTGTACTTCAGTGCTTAGCATTTACACCGCCTTTGACTGCTTATTTGCTTCAAGGATTACATTCGAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGCGAATTTGAAAGATTGATATTGAAGTCAAAGGACACAAAATATCCGGTGTCTCCTATGGGCATAATCTCCCATTTACAGAGTATTGGGAGTCAGCTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTTAGGCATGTTATTGACACAATGCAATCTGTTTGCCTTATGGAAGCCGGGGTTAAAGCATCAGGCTCATTAGAAGAGGACACTACTTTGATGGGTCAAACATTTGGAGGTTACCTTCGATCAAAGATAAAATGCATGAGATGTGGAGGGAAGTCTGAGCGTCAGGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGGGAGATAACAACCCTGGTGGAGGCCCTTCGACGATTTACAAACACTGAGACTTTGGATGGGGAAAACAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAAAAGCTGACAGTTTCAGAGGCACCGAATGTTCTTACAGTTGCATTAAAGAGATTTCAGTCTGGGAAATTTGGGAAGCTCAACAAGCCTATTCAGTTTCCTGAAATACTTAACTTGGCACCTTTCATGAGTGGAACTAGTGATAAATCACCCATATACAGATTGTGTGGGGTAGTTGTTCACTTAGATGTCATGAATGCTGCCTTTTCGGGTCACTATGTGTGCTATGTGAAGACTATCCAAAACAAGTGGTTCAAGGTTGATGACAGTGTGGTGACAGCTGTTGAATTGGAGAGAGTCTTGACAAAAGGAGCATATATGCTTTTCTATGCAAGGTGCTCGCCAAGGGCCCCAAGATTCATTAGGAACAGAATACTATCCCCAGATTCAAAAAGTAAAGTCAGTGTAAAGACTCTTTCAACGAAAGCAAGATCTTTATGTACTAATTCTGGTGTTACTGAACATGTCAATAGTTCCATTTCTCCCGATAACTCACCTGCCTTGGACTCTTTGTATTCAAAGTTTCACCACCTGAAAAGGATTTTAGAAGAAGACTCATCAAGTGATAATTCATCCCTTATCAGCAGCAACTCTGATGAAGGTTCTTGTAGTACAGATAGCACCCGCGATTCAACCAGCACAGACGACTTCTCCGAATATCTTTTTGGTGATTCAGAGAATGGCTGGAGTAGTGTGTGGAGAAATTCTGATTCCGACACATCTTCGTCCTCCTCCTCCTCGTCTTCTCCCCTATCTGACATGGACCGGTATGATTCAGTTTCTCCTGATGCAGAGGGTGGTCCTGTATACAGAGGGATATCTGATGTTTGTCGTTTGTCTTCTAACGCAACATTACAGCATAGAGAGTTAGAGAGTAGTAGGATTATTAGTAGCAACAGTAGTAGTAGGGAGACTGACTCTTTTCTGAAACTAGGATCTAACCATTTTAATGATATAGACTCTGCTGTATTATGTAGAAAGCCAAGAAAAAGAACGGATTAA 3384 0.4184 MRVTGDLGFSSLVLLVFSVVVQFIASVIRLKWRVSEARKEEINRLLFLAAEETARAENEANYDYGTAVSAALSNQCAVCYFPATARCAQCKSIRYCSFKCQTFHWRQGHKLECRPPSTTHWSDDVTSDLGSKVVEQGYSGIHVEKSESKGKECKIASEKPPISDICFSPKVSSGKDESIRVESLTEGNITDSNSELSSNSFSGFSASIGSSDSSDDSSVCESIISNEHDGSEEHTFVDPALDIPDNTGDDTMGATMSSSPKFATLVGSVDVFSSMHKLNHTEPGFSKEESKLASNGNSGSSMWKGKTIEPSTVFSGFWDKALDSRGIKDDTKNDTHPSHSDESTSKKTVSESSFHFSFSTMPPLNVRDTKTNDSVSDDTFPNCIGNNMACSGSASSENDNMNLSKGRNFSSINSKVSYLRSNVTPSGSESDQLESKDNSGPPLSSFSPQSSSVVKDSVSADALIFHNLQSTGSMVSNHVVDNHDSTLKSTKIRCWTRELDSHLASGTEEHSHSISKHGDNDIESGTRAVTSSQVASCSANSKSGLKTSVLKVVDQFRGSNLSKHFPLAVGSDIAGRHSDKSFFPYELFVKLYNSNEVELCPYGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKWCFTCEFERLILKSKDTKYPVSPMGIISHLQSIGSQLGNGREEDAHEFLRHVIDTMQSVCLMEAGVKASGSLEEDTTLMGQTFGGYLRSKIKCMRCGGKSERQERMMDLTVEIEGEITTLVEALRRFTNTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTVALKRFQSGKFGKLNKPIQFPEILNLAPFMSGTSDKSPIYRLCGVVVHLDVMNAAFSGHYVCYVKTIQNKWFKVDDSVVTAVELERVLTKGAYMLFYARCSPRAPRFIRNRILSPDSKSKVSVKTLSTKARSLCTNSGVTEHVNSSISPDNSPALDSLYSKFHHLKRILEEDSSSDNSSLISSNSDEGSCSTDSTRDSTSTDDFSEYLFGDSENGWSSVWRNSDSDTSSSSSSSSSPLSDMDRYDSVSPDAEGGPVYRGISDVCRLSSNATLQHRELESSRIISSNSSSRETDSFLKLGSNHFNDIDSAVLCRKPRKRTD 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0115 1127 MobiDBLite consensus disorder prediction 982 1011 - -
Aed10g0115 1127 Pfam Ubiquitin carboxyl-terminal hydrolase 603 904 IPR001394 GO:0004843|GO:0016579
Aed10g0115 1127 Pfam MYND finger 76 113 IPR002893 -
Aed10g0115 1127 SUPERFAMILY Cysteine proteinases 599 909 IPR038765 -
Aed10g0115 1127 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 603 618 IPR018200 GO:0004843|GO:0006511
Aed10g0115 1127 SUPERFAMILY HIT/MYND zinc finger-like 72 115 - -
Aed10g0115 1127 MobiDBLite consensus disorder prediction 288 305 - -
Aed10g0115 1127 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1108 - -
Aed10g0115 1127 Gene3D Cysteine proteinases 596 917 - -
Aed10g0115 1127 MobiDBLite consensus disorder prediction 325 348 - -
Aed10g0115 1127 Gene3D - 65 117 - -
Aed10g0115 1127 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 19 1108 - -
Aed10g0115 1127 MobiDBLite consensus disorder prediction 420 451 - -
Aed10g0115 1127 MobiDBLite consensus disorder prediction 325 352 - -
Aed10g0115 1127 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Aed10g0115 1127 MobiDBLite consensus disorder prediction 1028 1062 - -
Aed10g0115 1127 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Aed10g0115 1127 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 602 907 IPR028889 -
Aed10g0115 1127 MobiDBLite consensus disorder prediction 1028 1049 - -
Aed10g0115 1127 MobiDBLite consensus disorder prediction 281 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0115 Aed-Chr10 872260 879128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0115 582 911 Miscellaneous Gene Families AT4G31670 51.057 2.29e-117 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0115 K11855 - gmx:100793079 1691.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0115 10 872260 879128 Aed10g0115 10 872260 879128 ECH