Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0106 ATGGATTTAGTGGCACCACCCGAACACTTTTGCTCATTTCACCACTTCAACATAACCAGAGCTAGGGTTTCGGATTACACCGTTTCTCGTCCCTTCATTCTATCTCCTGATACTATTGTTAGTCACTTTAGTAAACTGAAGGGCACTAGGTCTAAGAAGCGTTTAGAAAATCGCGTTTCCGCGGTTTCCAAGTCCGAAGCTTCTGGCTTGAACGGTAGGTTGCAACAAATTGTGAGCACCCCAAACGGGGACTTGAATGGGGCGAACAACGGTTCCCGGAACTTGGAGGAGTTTGCTAGCAACATTCATCTCCGGAAGTTGCTTAGAAATGGAGAGTTAGAGGAAGGGTTGAAGTTTCTGGAGCGCATGATTTACCAAGGGGACATCCCTGATGTCATTGCTTGCACAAGTTTGATTCGCGGGTTTTGCAGGAGTGGAAAGACTAAGAAAGCCACGAGAATCATGGAAATTTTGGAGAATTCTGGTGCCGTACCTGATGTGATAACCTACAATGTTCTGATTGGTGGTTATTGCAAATCAGGGGAGATAGACAAAGCCTTGCAGGTTTTGGAGCGAATGAGTGTTGCACCGGATGTTGTTACTTATAACACGATTTTGCGTAGCTTGTGTGATGGTGGGAAACTGAAGGAGGCAATGGAGGTTCTTGACAGGCAGCTGCAGAGGGAGTGTTATCCTGATGTCATTACTTACACGATTTTGATTGAAGCGACTTGTAATGAAAGTGGCGTTGGTCAGGCGATGAAGCTGTTGGATGAGATGAGGTTGAAAGGGTGCAAACCTGACGTGGTCACTTACAATGTTCTTATCAATGGTATTTGCAAGGAGGGTCGATTGGATGAGGCAATTAAGTTTTTGAATAACATGCCATCTTATGGTTGTCAACCGAATGTGATTACTCATAACATTATTTTGCGTAGCATGTGTAGTACAGGGAGATGGATGGATGCTGAGAGGCTGTTAGCTGATATGCTCAGGAAGGGCTGTTCCCCTAGTGTTGTTACTTTCAATATCTTGATTAACTTCTTGTGCCGGAAACGGTTACTGGGTAGAGCCATCGATGTCTTGGAGAAAATGCCAAAGCATGGTTGTGTTCCGAATTCCTTGAGCTACAATCCATTGCTTCATGGATTTTGTCAAGAGAAAAAGATGGATAGAGCAATTGAGTATTTGGAAATAATGGTGTCAAGGGAAAAAGGATGCAAACCTACGGAAGCTACGTACACCATTCTTATAGAAGGCATTGCTGACGAAGGATTAGCTGAGGAAGCTTTGGAGTTGTTGAATGAGTTGTGCTCCAGTGGATTTGTGAAGAAAAGTTCGGCTGAACAGGTAGCAGTCAAGATGAGGGAGAGGAGAGGGGCTAGTGAAATGCGTGTCAATTTTGTTAGGAGAGTAATTTCTTTTTCAGCAAGTATAGGCTGTTGTAAAATGAAGCAATTTGATTCATCAATGGGTCTGGATTTCATCAGTGAAATGCATAGCAGCATTCAGTGTGTTCTTTGGATTGGACCAGAAAATGTTTATTTGGGTCTTTCATCCAATGCTGCTGCTGATTGCTACGTTTAA 1587 0.4354 MDLVAPPEHFCSFHHFNITRARVSDYTVSRPFILSPDTIVSHFSKLKGTRSKKRLENRVSAVSKSEASGLNGRLQQIVSTPNGDLNGANNGSRNLEEFASNIHLRKLLRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDGGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNESGVGQAMKLLDEMRLKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSREKGCKPTEATYTILIEGIADEGLAEEALELLNELCSSGFVKKSSAEQVAVKMRERRGASEMRVNFVRRVISFSASIGCCKMKQFDSSMGLDFISEMHSSIQCVLWIGPENVYLGLSSNAAADCYV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0106 528 Pfam PPR repeat 405 436 IPR002885 -
Aed10g0106 528 Pfam PPR repeat 162 194 IPR002885 -
Aed10g0106 528 TIGRFAM PPR: pentatricopeptide repeat domain 270 304 IPR002885 -
Aed10g0106 528 TIGRFAM PPR: pentatricopeptide repeat domain 413 443 IPR002885 -
Aed10g0106 528 TIGRFAM PPR: pentatricopeptide repeat domain 200 234 IPR002885 -
Aed10g0106 528 TIGRFAM PPR: pentatricopeptide repeat domain 340 374 IPR002885 -
Aed10g0106 528 TIGRFAM PPR: pentatricopeptide repeat domain 305 339 IPR002885 -
Aed10g0106 528 TIGRFAM PPR: pentatricopeptide repeat domain 235 269 IPR002885 -
Aed10g0106 528 TIGRFAM PPR: pentatricopeptide repeat domain 376 410 IPR002885 -
Aed10g0106 528 TIGRFAM PPR: pentatricopeptide repeat domain 134 167 IPR002885 -
Aed10g0106 528 TIGRFAM PPR: pentatricopeptide repeat domain 168 194 IPR002885 -
Aed10g0106 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Aed10g0106 528 Gene3D Tetratricopeptide repeat domain 82 226 IPR011990 GO:0005515
Aed10g0106 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Aed10g0106 528 Pfam PPR repeat family 337 386 IPR002885 -
Aed10g0106 528 Pfam PPR repeat family 267 316 IPR002885 -
Aed10g0106 528 Pfam PPR repeat family 197 246 IPR002885 -
Aed10g0106 528 Pfam PPR repeat 134 161 IPR002885 -
Aed10g0106 528 Pfam PPR repeat 107 127 IPR002885 -
Aed10g0106 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Aed10g0106 528 PANTHER ATPASE EXPRESSION PROTEIN 3 404 454 - -
Aed10g0106 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Aed10g0106 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Aed10g0106 528 PANTHER ATPASE EXPRESSION PROTEIN 3 40 403 - -
Aed10g0106 528 PANTHER OS02G0565400 PROTEIN 40 403 - -
Aed10g0106 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 196 IPR002885 -
Aed10g0106 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Aed10g0106 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Aed10g0106 528 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 409 IPR002885 -
Aed10g0106 528 Gene3D Tetratricopeptide repeat domain 366 442 IPR011990 GO:0005515
Aed10g0106 528 Gene3D Tetratricopeptide repeat domain 227 296 IPR011990 GO:0005515
Aed10g0106 528 Gene3D Tetratricopeptide repeat domain 297 365 IPR011990 GO:0005515
Aed10g0106 528 PANTHER OS02G0565400 PROTEIN 404 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0106 Aed-Chr10 811214 813811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g0106 107 454 Glycosyltransferase AT1G05670 32.194 8.59e-63 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0106 - - gmx:100790449 768.459