Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0083 ATGAGGGAGTGCATTTCAATCCACATTGGTCAGGCCGGTATCCAGGTCGGAAACGCCTGCTGGGAACTCTATTGCCTTGAGCATGGCATTCAGCCCGATGGACAGATGCCGAGCGACAAGACAGTTGGCGGAGGAGACGACGCCTTCAACACATTCTTCAGCGAGACTGGCGCCGGAAAGCACGTGCCACGCGCCGTCTTCGTGGATCTGGAGCCCACTGTGATCGACGAAGTGATTTCATCCCTGACTGCCTCATTGAGGTTCGATGGAGCACTGAACGTTGATGTGACAGAGTTCCAAACCAACTTGGTTCCATACCCAAGGATCCACTTCATGCTTTCCTCATACGCCCCTGTTATCTCCGCCGAGAAAGCATTCCACGAGCAGCTTTCAGTTGCCGAGATCACCAATAGTGCCTTCGAGCCATCCTCCATGATGGCCAAGTGCGACCCTCGCCACGGCAAGTACATGGCGTGCTGTTTGATGTATCGTGGCGACGTGGTCCCGAAGGATGTGAATGCTGCAGTGGCCACCATCAAGACAAAGAGAACCATCCAGTTTGTGGATTGGTGCCCCACTGGGTTCAAGTGTGGCATCAACTATCAGCCTCCAACTGTTGTTCCAGGTGGGGACCTTGCGAAGGTGCAGAGGGCTGTGTGCATGATTTCTAACTCGACCAGCGTGGCTGAAGTGTTCTCTAGGATTGATCATAAGTTTGATCTGATGTATGCTAAGAGGGCCTTCGTGCACTGGTATGTGGGTGAGGGTATGGAAGAGGGTGAGTTCTCAGAGGCTCGTGAGGACCTTGCTGCTCTTGAGAAGGATTATGAGGAGGTTGGTGCTGAGTCTGGTGATGGAGATGATGATGGTGAAGGAGATGATGATTATTAG 891 0.5286 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESGDGDDDGEGDDDY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0083 296 Coils Coil 262 282 - -
Aed10g0083 296 PRINTS Alpha-tubulin signature 18 33 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed10g0083 296 PRINTS Alpha-tubulin signature 45 58 IPR002452 GO:0005200|GO:0005525|GO:0005874|GO:0007017
Aed10g0083 296 Gene3D Tubulin/FtsZ, GTPase domain 80 112 IPR036525 -
Aed10g0083 296 PANTHER TUBULIN ALPHA-6 CHAIN 1 78 - -
Aed10g0083 296 PANTHER TUBULIN ALPHA-6 CHAIN 78 291 - -
Aed10g0083 296 SUPERFAMILY Tubulin C-terminal domain-like 90 280 IPR008280 -
Aed10g0083 296 Gene3D Helix hairpin bin 228 280 IPR023123 -
Aed10g0083 296 Pfam Tubulin/FtsZ family, GTPase domain 3 81 IPR003008 GO:0005525
Aed10g0083 296 CDD alpha_tubulin 2 279 - -
Aed10g0083 296 Gene3D - 113 227 IPR037103 -
Aed10g0083 296 PANTHER TUBULIN 1 78 IPR000217 GO:0005874|GO:0007017
Aed10g0083 296 PANTHER TUBULIN 78 291 IPR000217 GO:0005874|GO:0007017
Aed10g0083 296 Pfam Tubulin C-terminal domain 107 236 IPR018316 -
Aed10g0083 296 SMART Tubulin_C_4 92 237 IPR018316 -
Aed10g0083 296 PRINTS Tubulin signature 53 72 IPR000217 GO:0005874|GO:0007017
Aed10g0083 296 PRINTS Tubulin signature 10 30 IPR000217 GO:0005874|GO:0007017
Aed10g0083 296 PRINTS Tubulin signature 165 178 IPR000217 GO:0005874|GO:0007017
Aed10g0083 296 MobiDBLite consensus disorder prediction 275 296 - -
Aed10g0083 296 Gene3D Tubulin/FtsZ, GTPase domain 1 79 IPR036525 -
Aed10g0083 296 SUPERFAMILY Tubulin nucleotide-binding domain-like 1 86 IPR036525 -
Aed10g0083 296 MobiDBLite consensus disorder prediction 280 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0083 Aed-Chr10 618227 620531 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0083 K07374 - ehx:EMIHUDRAFT_106820 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0083 10 618227 620531 Aed10g0083 10 618227 620531 ECH