Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0079 ATGGTGTCTTCAAAGAGGCCAAATGTAGAGCCGAATGGGAAAGGGAAAGGCAAAGGGAAACGGCAGAAATCTTCGGGCGGTTTTTCGCCGTTGGGTGTTTCTCCGGGGAGTGTCATGTTCCGTTTGCTCTGTCATGCTTCTAGAATTGGCGGTGTTATTGGCAAAGGTGGTTCCATCATATCACAAATTCGCCAAGAGACTGGTGTGAAGGTTAAGATTGAGGAAGCTGTTCCTGGGTGTGATGAAAGGGTTATTACTATCACGGGTTCAGATAAAGAGGCGGAAGAAGATACTACTGCTGAGCAGGCTAAGGAGGTTAATAACGATGAGACTGAAAGTGTGAGGAAGGAGGATGAGGAGGAGAAGGATGATGGTGATGGTAATGGTGATAAAGAAGATAAAGTTTCTGTTCCTGTTGAAGATTCGCAGAGTGAGAAGGGGAATTCAGCTATTCGGAAGGCTATATCACTAGTTTTTGAGAGGATGGTTGAGGGAGTAGAGGAGACAACTGAAGAGGATGAAGAAAGTAATAAATCTTCATTTTTTTTAAGGTTGCTTATTCTTACTACTCAAGTTGGATGCATTCTAGGAAAGGGTGGTAGTGTGATAAAGAGAATGGCAGCTGAGAGTGGTGCACAGATTCGGATCCTTCCTAAAGACAAACTTCCAGCGTGTGCATCAGCTTCCGATGAGATAATTCAGATCTCAGGAGGTGTAGAAGTTGTCAGGAAAGCTCTTCAATCTGTTTCTCAACAGCTTTTGGAAAATCCACCCCGGGATCACGAATCTGCTAATTTTACTGGGCCGTCATCTCATTCATATGGGAAAGTCCCACCACACAACCGTTCTTTTGCAGCTCAAGGAACACCTTTTGCTACTGGGCCTCATGATATTTCTGTTTTTCATGCTGCCCCTCCTTTGATTCCCAAGTTTCATGAAGCTGCCATCCACGGTCGCACGAGGCCTTTACAGGAAATGCTTACTTTCCGTTTATTGTGTCCTGTGGAAAGGGTAGGAAATATAATTGGTAAAGGTGGAGCAATCATAAAGACAGTGCAGCAAGAGACAGCAAGTGAAATCAAGGTTTTAGAAGCCCCTCCAGATTCAGAGGACAGTGTTATTGTTATATCTGGTCCAGCGGTAAATGGAGAAATTGAGGCAGTGCATGATGCTATTTTTCAAATAACCACTAGATTAAAACATCATTTCTTTCGTGATTCATTTCCATCAAATTCTCCATTTCCGGATCAACTTCCTCCATTCCCACCTTATTTAGGAAGGCGGGGACTTTCACCTCCTGGGATGTATTCCGACCTTGGTCCTCCACCTCCACATGCGGGTTTTCATCTTGATGATCGCCCTCCTTTTTTTAATAATATACATAGACCTGGCATTCCTCCTCACATATCTGAAAGGAAGCCTTGGGGTCCTCAGGGGGCACTTGACGGTGGTGCACCCTTTGGCTTTTCAGACATTCCAGGAGGTCCTCCTAGAAGAATTTCAGGATTTGCAGGGGGGAGCCAACCAATTATCACAAGTACCACTGTTGAAGTTGTTGTTCCTCGAGCAATGGTGCCTGTTATATATGGGGAAGATGGTGAATGCCTGAAACAAATACTTCAGATCTCTGATGCAAATATTACTATTACTGATCCAAAGCCTGGAGCTATGGAAACTAAAATTATAATATCTGGAACCCCAGAGCAAACTCATGCTGCCCAAAGTCTTATTCAGGCATTTGTCATGAGCGAGAGGGAGTCTGTTTGA 1767 0.4426 MVSSKRPNVEPNGKGKGKGKRQKSSGGFSPLGVSPGSVMFRLLCHASRIGGVIGKGGSIISQIRQETGVKVKIEEAVPGCDERVITITGSDKEAEEDTTAEQAKEVNNDETESVRKEDEEEKDDGDGNGDKEDKVSVPVEDSQSEKGNSAIRKAISLVFERMVEGVEETTEEDEESNKSSFFLRLLILTTQVGCILGKGGSVIKRMAAESGAQIRILPKDKLPACASASDEIIQISGGVEVVRKALQSVSQQLLENPPRDHESANFTGPSSHSYGKVPPHNRSFAAQGTPFATGPHDISVFHAAPPLIPKFHEAAIHGRTRPLQEMLTFRLLCPVERVGNIIGKGGAIIKTVQQETASEIKVLEAPPDSEDSVIVISGPAVNGEIEAVHDAIFQITTRLKHHFFRDSFPSNSPFPDQLPPFPPYLGRRGLSPPGMYSDLGPPPPHAGFHLDDRPPFFNNIHRPGIPPHISERKPWGPQGALDGGAPFGFSDIPGGPPRRISGFAGGSQPIITSTTVEVVVPRAMVPVIYGEDGECLKQILQISDANITITDPKPGAMETKIIISGTPEQTHAAQSLIQAFVMSERESV 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0079 588 CDD KH-I 515 578 - -
Aed10g0079 588 Gene3D K Homology domain, type 1 178 258 IPR036612 GO:0003723
Aed10g0079 588 MobiDBLite consensus disorder prediction 1 30 - -
Aed10g0079 588 CDD PCBP_like_KH 40 90 - -
Aed10g0079 588 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 513 582 IPR036612 GO:0003723
Aed10g0079 588 Gene3D K Homology domain, type 1 511 586 IPR036612 GO:0003723
Aed10g0079 588 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 320 401 IPR036612 GO:0003723
Aed10g0079 588 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 175 259 IPR036612 GO:0003723
Aed10g0079 588 MobiDBLite consensus disorder prediction 86 140 - -
Aed10g0079 588 SMART kh_6 325 397 IPR004087 GO:0003676
Aed10g0079 588 SMART kh_6 36 106 IPR004087 GO:0003676
Aed10g0079 588 SMART kh_6 179 254 IPR004087 GO:0003676
Aed10g0079 588 SMART kh_6 512 582 IPR004087 GO:0003676
Aed10g0079 588 ProSiteProfiles Type-1 KH domain profile. 180 249 - -
Aed10g0079 588 ProSiteProfiles Type-1 KH domain profile. 513 577 - -
Aed10g0079 588 CDD PCBP_like_KH 182 250 - -
Aed10g0079 588 Gene3D K Homology domain, type 1 323 402 IPR036612 GO:0003723
Aed10g0079 588 Gene3D K Homology domain, type 1 36 106 IPR036612 GO:0003723
Aed10g0079 588 MobiDBLite consensus disorder prediction 84 148 - -
Aed10g0079 588 Pfam KH domain 41 94 IPR004088 GO:0003723
Aed10g0079 588 Pfam KH domain 515 578 IPR004088 GO:0003723
Aed10g0079 588 Pfam KH domain 328 395 IPR004088 GO:0003723
Aed10g0079 588 Pfam KH domain 184 249 IPR004088 GO:0003723
Aed10g0079 588 ProSiteProfiles Type-1 KH domain profile. 37 107 - -
Aed10g0079 588 MobiDBLite consensus disorder prediction 254 274 - -
Aed10g0079 588 ProSiteProfiles Type-1 KH domain profile. 326 395 - -
Aed10g0079 588 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 381 449 - -
Aed10g0079 588 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 381 - -
Aed10g0079 588 Coils Coil 100 120 - -
Aed10g0079 588 CDD PCBP_like_KH 328 396 - -
Aed10g0079 588 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 381 449 - -
Aed10g0079 588 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 3 381 - -
Aed10g0079 588 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 33 93 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0079 Aed-Chr10 585819 593997 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0079 K21444 - gmx:100777433 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0079 10 585819 593997 Aed10g0079 10 585819 593997 ECH