Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0062 ATGAGCGTTTCACATTTCGCGGTTCTATCGTCTTGTCGTCCACGCTTCACCCCTTCGCTGTTGCGTGCTTCAACCCTCCGTTCTCGCATTCGGTGTTGTTCTACTCTTACTTCCACTTCTACAGAGACTCTCACTCCAACCTCAGTAAAGAAACGAGTAGTGTCGGGAGTTCAGCCCACGGGCTCAATTCACCTCGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCCCTTCAGAATGTGTATGATACACTTTTCTTCATTGTGGACCTGCACGCGATCACATTACCATATGACACCCAACAATTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTGGAACCTTCAAAGGCTTCAGTATTTGTACAGTCTCATGTTCGGGCACATGTAGAGTTGATGTGGTTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCATTTAGAGTTGACCCGTGACTTGGCTGAACGGGTTCCAGAGCCCCTAATACCTCCAGCTGGAGCCCGGATAATGTCCCTAACTGATGGCATGTCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCTGGCATGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCTATATACCAGCTTATTTCAGGAAAGACGAAAGAGGAAGTTGTGCAGGAATGCCAAAACATGAACTGGGGCACATTCAAACCTGTTTTAACAGATGCCTTGATTGATCATTTGCATCCCATTCAGGTTCGCTATGAGGAAATCATGTCCGATTCAGGTTATTTAGATGGAGTTTTGACACAAGGTGCTAGAAATGCATCAGATATAGCAGATTCTACACTTCACAATGTTTACCAAGCAATGGGATTTTTGAAGAGACAGTGA 1113 0.4349 MSVSHFAVLSSCRPRFTPSLLRASTLRSRIRCCSTLTSTSTETLTPTSVKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYDTLFFIVDLHAITLPYDTQQLSKATRSTAAIYLACGVEPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVPEPLIPPAGARIMSLTDGMSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPGMEFDNSERPECNNLLSIYQLISGKTKEEVVQECQNMNWGTFKPVLTDALIDHLHPIQVRYEEIMSDSGYLDGVLTQGARNASDIADSTLHNVYQAMGFLKRQ 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0062 370 PRINTS Tryptophanyl-tRNA synthetase signature 63 79 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Aed10g0062 370 PRINTS Tryptophanyl-tRNA synthetase signature 190 211 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Aed10g0062 370 PRINTS Tryptophanyl-tRNA synthetase signature 113 132 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Aed10g0062 370 PRINTS Tryptophanyl-tRNA synthetase signature 233 243 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Aed10g0062 370 PANTHER BNAA04G15180D PROTEIN 24 366 - -
Aed10g0062 370 Hamap Tryptophan--tRNA ligase [trpS]. 50 367 IPR024109 GO:0004830
Aed10g0062 370 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 59 68 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aed10g0062 370 Gene3D HUPs 53 365 IPR014729 -
Aed10g0062 370 Pfam tRNA synthetases class I (W and Y) 51 321 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Aed10g0062 370 Gene3D - 226 336 - -
Aed10g0062 370 TIGRFAM trpS: tryptophan--tRNA ligase 50 366 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Aed10g0062 370 SUPERFAMILY Nucleotidylyl transferase 51 366 - -
Aed10g0062 370 CDD TrpRS_core 52 318 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Aed10g0062 370 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 24 366 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0062 K01867 - gmx:100780447 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0062 10 429371 435023 Aed10g0062 10 429371 435023 ECH