Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed10g0046 | ATGGAATCGCATGCCTCCAATTCCAATTCTCCATACCATCACCACTACCACCCTCGTTTCAAGCCAAGCCAACCAATCTCAGACCGAATAGTCCGCGCCCTCCGCCACCGCCTCCGCCTCCTCCACCGCTCCGGCTCCACCTTCTTCATACTAGGTGCCACCGGAAACGTGTACACAGTGACACTATCCTCCACGCCCTCTTGCACCTGCCCTGACCGCACAACACCGTGCAAGCACATCCTCTTCGTGTTCATTCGAGTTTTGGGAGTGTCCCTGGACGATGTCTGTCTGAGGAGGAGGAGCCTCCGTGCCTGCCAGCTGCAGCGCCTCCTGGGCACGGCCACATTGCCGGAGGCAGTGGCGGGGGGGACCCTGAGGCAGAGGTTCCACCAGCTGTTCTTTGGCGGAGGGTCAGCAGGGGAAAAGATAGAAACAGAGGAGGGTGCAACGTGCCCTGTTTGCCTTGAGGAAATGGGGGGGAAGGAGCAGAACCTGGTGGCCTGTGGGACATGCCGGAACCCGATTCATGAAGAGTGTTTGATGAGGTGGAAGAGGACAAAGGGAAGAAATGGTGCTAGCTGTGTGATTTGCAGAGCAAGGTGGAGGGATAGGGTGGAGCAGGATAAGTATCTCAACCTCTCTGCTTATGTTGGCGAAGATGATATGGATTCACCTGATGCCTGCCTCTGCACTGGATAA | 699 | 0.568 | MESHASNSNSPYHHHYHPRFKPSQPISDRIVRALRHRLRLLHRSGSTFFILGATGNVYTVTLSSTPSCTCPDRTTPCKHILFVFIRVLGVSLDDVCLRRRSLRACQLQRLLGTATLPEAVAGGTLRQRFHQLFFGGGSAGEKIETEEGATCPVCLEEMGGKEQNLVACGTCRNPIHEECLMRWKRTKGRNGASCVICRARWRDRVEQDKYLNLSAYVGEDDMDSPDACLCTG | 232 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed10g0046 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 151 | 198 | IPR001841 | - | |
| Aed10g0046 | 232 | PANTHER | RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 | 1 | 222 | IPR039903 | GO:0061630 | |
| Aed10g0046 | 232 | Pfam | SWIM zinc finger | 58 | 86 | IPR007527 | GO:0008270 | |
| Aed10g0046 | 232 | ProSiteProfiles | Zinc finger SWIM-type profile. | 58 | 88 | IPR007527 | GO:0008270 | |
| Aed10g0046 | 232 | PANTHER | - | 1 | 222 | - | - | |
| Aed10g0046 | 232 | SUPERFAMILY | RING/U-box | 142 | 204 | - | - | |
| Aed10g0046 | 232 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Aed10g0046 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 213 | IPR013083 | - | |
| Aed10g0046 | 232 | Pfam | Ring finger domain | 150 | 198 | IPR001841 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed10g0046 | - | - | gmx:100775505 | 406.371 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aed10g0046 | 10 | 315949 | 316647 | Aed10g0046 | 10 | 315949 | 316647 | ECH |