Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g0045 ATGGAAGACGCCGGAAAAATTGTGAAGTTCGGCAAGCTGTCCCGTAAGGTGGTTGACATGGCTGCGGGGGAAGCACACACTCTCCTTCTTACTGGGGATGGCAGTGTGTACTGTTGGGGTAAGGGAATGTTTGGACGCCTTGGGACTGGGGCAGAAAAAGACGAGCTTTTTCCAGTTCAGCTCAACTTTGGAAACCCAAATCCAAATGGAGCAGAAGAAGCCACTGTCAAAATACTTGCAATTGCTGCTGGTGCTTATCATAGTCTCGCTCTAGCAGAATTTGAAGGTCATTCCCCACATCTAATTCTTCATTCTGTTGATCTGTTGTGTGTTGACAGAAGACGGAGCTGTTTGTTTGTTGAATTTATACTATGTACTAGCATCTACATCCTTGACTACTGTATGGATGGTCAACTTGGTATAAATGGAGAGGAATCGCATGACGATGAATATGCTGTTGGAGACAATTCTCTAGTCCCCCGCTTACTGAACAAGTTTCTTGAATTGCATCCACCAGATTCTTCTTCATCGGGTGTGTCTGAAGCAGAAAGCAAAACATCACTTAAGATATGTGATGTCAAAGCTGGAGGAATGATGTCTCTGGCTATTGATAACTGCGGGACCCTGTGGATGTGGGGAAACTGCCCACAACAAAGCAAAGAAGGCGGGTTAGCACTTGTAAGCAGTTTCACTCCAACTCCAGTTTGGGATTTTCAGGGTCACACTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCTCTGGTTAGTGCTGGGGAATCATACAATGGTGAAGACCTAGTGTGCTACTCTTGGGGTTATAACAGCCGTGGCCAATTAGGGTTGGGGGATAGAGAGAGCAGGCTGCATCCGGAAGTTGTTAAAACATTTAATGAGGAGTATCCTTATGAGGTAGCATGTGGTGCCTTTCACACTGCTTTGCTCACTCACAAAAAGAAATCTAGTGACACATTAGAAAGCACATTGTGGACCTTTGGCCTTGGGGATAATGGCCAGCTTGGGCATGGAACAACGCAAAGTGCATTGTCTCCTACACCTGTTAAAGAATTGCCACAAAATGTGTCACTTATTTGTGTTGACTGTGGTTTGTTTCATACTAGTGTTGTTTCCTTGGATGGGGATGTGTGGTCATGGGGAATGGAGAAGGGCCTTGGGTTATGCCCTGATGCTAGTCGTGCCGGAACAGATTCCGGTGATGCCCTCTCTCCCCATCTCATGCCATACAAGCCACATCAACCTAAATTTCCAGGTCCAGTTAAAGTTGCATGTGGGGCTGCACATACTATTATTGTTGCGGGAGAGGGATATAGAATGTGGTCTTGGGGTAGGGGAAGGAGTGGAGTTCTTGGAGATGGTAAAGGGTTAGATTGTTATACTCCTACGGTCGTGCTATGGCCTTCTACGATGGAGGATTTTGAGGAAGAAGGAGTAACAAACTCTGGTGAGCAAGATAAGGCTAGTGAAAAGGAGACTGAAGTGACAGCAGAAACAGATGAGAAATTATCCTCAGCATTGAATGAGCTGAAGCTGCTTCAAACAAAGCTATCAATAATGGAAAAATATGCTAGTATACTTCATGGTTCTATTTTTGGAAAACCTTTTGATGAACAAGATATCCCTGTTTCATTGCGGAATTCAGGTTCATTTGACATTGCAAAAGAATGGGAGAATATGTTAGAGGCAGCAGATCAAAGGAAGCTAATTAGGTTGGAAATGTTTTACCGTGAGATGCTTACTGGAGTGAAAGATGAACTAATGAAGAAAAAGATCAAGGAGATTGTAAAAGAGTGTCTCCAATCTTCAGAGGTGAAAAAATAG 1842 0.4408 MEDAGKIVKFGKLSRKVVDMAAGEAHTLLLTGDGSVYCWGKGMFGRLGTGAEKDELFPVQLNFGNPNPNGAEEATVKILAIAAGAYHSLALAEFEGHSPHLILHSVDLLCVDRRRSCLFVEFILCTSIYILDYCMDGQLGINGEESHDDEYAVGDNSLVPRLLNKFLELHPPDSSSSGVSEAESKTSLKICDVKAGGMMSLAIDNCGTLWMWGNCPQQSKEGGLALVSSFTPTPVWDFQGHTVVKVACGNEHVVALVSAGESYNGEDLVCYSWGYNSRGQLGLGDRESRLHPEVVKTFNEEYPYEVACGAFHTALLTHKKKSSDTLESTLWTFGLGDNGQLGHGTTQSALSPTPVKELPQNVSLICVDCGLFHTSVVSLDGDVWSWGMEKGLGLCPDASRAGTDSGDALSPHLMPYKPHQPKFPGPVKVACGAAHTIIVAGEGYRMWSWGRGRSGVLGDGKGLDCYTPTVVLWPSTMEDFEEEGVTNSGEQDKASEKETEVTAETDEKLSSALNELKLLQTKLSIMEKYASILHGSIFGKPFDEQDIPVSLRNSGSFDIAKEWENMLEAADQRKLIRLEMFYREMLTGVKDELMKKKIKEIVKECLQSSEVKK 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g0045 613 PRINTS Chromosome condensation regulator RCC1 signature 370 388 IPR000408 -
Aed10g0045 613 PRINTS Chromosome condensation regulator RCC1 signature 77 93 IPR000408 -
Aed10g0045 613 PRINTS Chromosome condensation regulator RCC1 signature 246 262 IPR000408 -
Aed10g0045 613 PRINTS Chromosome condensation regulator RCC1 signature 439 460 IPR000408 -
Aed10g0045 613 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 34 94 IPR000408 -
Aed10g0045 613 SUPERFAMILY RCC1/BLIP-II 15 91 IPR009091 -
Aed10g0045 613 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 442 IPR000408 -
Aed10g0045 613 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 380 IPR000408 -
Aed10g0045 613 MobiDBLite consensus disorder prediction 486 505 - -
Aed10g0045 613 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 306 316 IPR000408 -
Aed10g0045 613 Gene3D - 266 510 IPR009091 -
Aed10g0045 613 Pfam Regulator of chromosome condensation (RCC1) repeat 330 376 IPR000408 -
Aed10g0045 613 Pfam Regulator of chromosome condensation (RCC1) repeat 271 316 IPR000408 -
Aed10g0045 613 Pfam Regulator of chromosome condensation (RCC1) repeat 33 91 IPR000408 -
Aed10g0045 613 Pfam Regulator of chromosome condensation (RCC1) repeat 380 438 IPR000408 -
Aed10g0045 613 Gene3D - 6 265 IPR009091 -
Aed10g0045 613 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 137 613 - -
Aed10g0045 613 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 2 93 - -
Aed10g0045 613 SUPERFAMILY RCC1/BLIP-II 134 474 IPR009091 -
Aed10g0045 613 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 268 319 IPR000408 -
Aed10g0045 613 MobiDBLite consensus disorder prediction 480 506 - -
Aed10g0045 613 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 207 259 IPR000408 -
Aed10g0045 613 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 137 613 - -
Aed10g0045 613 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 2 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g0045 Aed-Chr10 309458 311875 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g0045 - - gmx:100815199 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g0045 10 309458 311875 Aed10g0045 10 309458 311875 ECH