Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02093 ATGGGAACGAGAACCGCGCAACTTCTCGTGCGAGAACTCGAGAACCGCTTCGTCCCCGCGGTGAAAAACTGCGCGAGAATATCGGAATTGAAAAAGATTCACGCACACGTCGTGAAGCTTTCGCTATCACAGAGCAACTTTGTGATTACAAAAATGTTGGATTGTTGCGACAAATTCAGTAATGTAAATTATGCCACCTTGCTATTCGAGCAACTCGTGGAGCCAAACGTGTTCTCTTACAACGCAATCATCAGAGCCTTAACGCACAATCAAGAACACTACCTAGCAATCACAGTGTTCAAGAGAATTCTGATGAGGGAAGAAAGGATTTCAGATAAAGTTCCGATTTTGCCCAATGAATTCACGTTCCCGTTTGTGATAAAGTCGTGTTCGGTGCTCTCATTGCGGTGTCTTGGTGAAGAGATTCATGGGCAGGTTTGGAAATTTGGGCTGAAGTCAAATTCTGTGACCGAGAATGCACTGATTGATATGTATACGAAATTCGGTGATCTGAGGAATGCACATAAGGTGTTTGAGGAAATGACTGAGCCAGATGCTGTTTCCTGGAATGGCTTGATCTTTGGGTATGCTAGGTTGGGGCAGATGGAGAGTGCAAGGGTGCTGTTTGATGAAATGCCTTGTAGAACAATTGTTTCTTGGACTGCAATGATATCCGGGTACTGCGGAATAGGGTGTTATGGTGATGCATTGGACATCTTCAGGAGGATGCAAATGGTGGGCATTGAGGCTGATGAGATTAGTGTTATAACTGTTTTGCCTGCTTGTGCACACCTTGGAGCTCTTGAGGTTGGGAAATGGATTCATATGTACTCAGGTAAAAACGGGTTTCTGCAGAAAACCGGCATCTGCAATGCACTGGTTGAAATGTATGCTAAGTGCGGTTGCATTGATGAAGCAATGAGCTTGTTTGATCAAATGGTTGAGAAGGATGTGATTTCTTGGAGTACCATGATTGGAGGGCTAGCTAATCATGGGAAAGCTCATGCATCAATTGAGCTGTTTCGGAAAATGCAGAAGGCGCAAGTTACACCTAATGGGATAACTTTTCTTGGTGTTTTGTCAGCTTGCACTCATGCAGGGTTTTGGAATGAGGGGTTGAAATATTTTGATGTCATGAGGTTGGAGTATCATATAGCCCCTGAAATTGAGCACTATGGTTGCTTGGTTGATCTTCTAGGACGTTCTGGGCAGCTCGAGCAGGCCCTTGACGCAATATCTAAGATGCCAATGAAGCCAGATTCAAGGATATGGAACTCCTTGTTAAGCTCTTGCAGGATTCATCGCAATCTTGAGATTGCTGTTGTTGCAATGGAACAGCTTTTGGAGCTTGAGCCAGAGGAATCTGGAAACTATGTTTTGCTTGCTAACATATATGCAGAACTTGGCAAGTGGGAAGGTGTATCAAATGTTAGGAAACTCATTAGAAGCAAGGGGATAAAGAAAACGCCAGGGTGTAGCATGATTGAGGTTGACAATGTGGTTCAAGAGTTTGTATCAGGTGATGATTCAAAACCCTTCTCACAAGATGTGTTTTGGATTCTAGAAGTCCTGGTTTTACACCAAACTAGAACTAATGATTTGATGGAGGATGTCACAGAAGATGCAAGTAAACTCTGGTGA 1641 0.4363 MGTRTAQLLVRELENRFVPAVKNCARISELKKIHAHVVKLSLSQSNFVITKMLDCCDKFSNVNYATLLFEQLVEPNVFSYNAIIRALTHNQEHYLAITVFKRILMREERISDKVPILPNEFTFPFVIKSCSVLSLRCLGEEIHGQVWKFGLKSNSVTENALIDMYTKFGDLRNAHKVFEEMTEPDAVSWNGLIFGYARLGQMESARVLFDEMPCRTIVSWTAMISGYCGIGCYGDALDIFRRMQMVGIEADEISVITVLPACAHLGALEVGKWIHMYSGKNGFLQKTGICNALVEMYAKCGCIDEAMSLFDQMVEKDVISWSTMIGGLANHGKAHASIELFRKMQKAQVTPNGITFLGVLSACTHAGFWNEGLKYFDVMRLEYHIAPEIEHYGCLVDLLGRSGQLEQALDAISKMPMKPDSRIWNSLLSSCRIHRNLEIAVVAMEQLLELEPEESGNYVLLANIYAELGKWEGVSNVRKLIRSKGIKKTPGCSMIEVDNVVQEFVSGDDSKPFSQDVFWILEVLVLHQTRTNDLMEDVTEDASKLW 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02093 546 Pfam Pentatricopeptide repeat domain 73 130 IPR002885 -
Adu10g02093 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Adu10g02093 546 Pfam PPR repeat 187 214 IPR002885 -
Adu10g02093 546 Pfam PPR repeat 159 183 IPR002885 -
Adu10g02093 546 Pfam PPR repeat 391 416 IPR002885 -
Adu10g02093 546 Pfam E motif 434 496 IPR046848 -
Adu10g02093 546 Gene3D Tetratricopeptide repeat domain 288 507 IPR011990 GO:0005515
Adu10g02093 546 Gene3D Tetratricopeptide repeat domain 12 113 IPR011990 GO:0005515
Adu10g02093 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 215 IPR002885 -
Adu10g02093 546 TIGRFAM PPR: pentatricopeptide repeat domain 218 252 IPR002885 -
Adu10g02093 546 TIGRFAM PPR: pentatricopeptide repeat domain 289 318 IPR002885 -
Adu10g02093 546 TIGRFAM PPR: pentatricopeptide repeat domain 319 352 IPR002885 -
Adu10g02093 546 TIGRFAM PPR: pentatricopeptide repeat domain 187 213 IPR002885 -
Adu10g02093 546 SUPERFAMILY TPR-like 164 472 IPR011990 GO:0005515
Adu10g02093 546 Gene3D Tetratricopeptide repeat domain 141 272 IPR011990 GO:0005515
Adu10g02093 546 PANTHER OS05G0439300 PROTEIN 10 539 - -
Adu10g02093 546 Pfam PPR repeat family 316 363 IPR002885 -
Adu10g02093 546 Pfam PPR repeat family 216 263 IPR002885 -
Adu10g02093 546 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 10 539 - -
Adu10g02093 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 184 IPR002885 -
Adu10g02093 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Adu10g02093 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 316 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02093 Adu-Chr10 92806837 92808477 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02093 24 530 Glycoside Hydrolase AT3G49170 31.641 1.93e-86 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02093 - - cam:101511241 820.461